BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330097
Length=4020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14180.1 | Symbols: AtPRD1, PRD1 | putative recombination in... 2778 0.0
AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 145 4e-33
> AT4G14180.1 | Symbols: AtPRD1, PRD1 | putative recombination
initiation defect 1 | chr4:8178330-8183515 FORWARD LENGTH=3807
Length=3807
Score = 2778 bits (1504), Expect = 0.0
Identities = 1735/1845 (94%), Gaps = 21/1845 (1%)
Strand=Plus/Plus
Query 2166 CAGGAGTCTTCAAAACGAGAGATACCAGGTATCCTACAGTCTAGAGGCTGAGAGAATACT 2225
|||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
Sbjct 1980 CAGGAGTCTTCAAAACGAGAGATACCAGATATCCTACAGTCTTGAAGCTGAGAGAATAAT 2039
Query 2226 CTTCCATCTATTAAACGAATATGAGTGGGACTTGGGTTCCAGTAATATTCATCTAGAATC 2285
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2040 CTTCCATCTACTAAACGAATATGAGTGGGACTTGGGTTCCATTAATATTCATCTAGAATC 2099
Query 2286 TCTGAAGTGGCTTTTTCAACAAGAAAGTATCAGCAAAAGTTTAACTTACCAGATCCAAAA 2345
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2100 TCTGAAGTGGCTTTTTCAACAAGAAAGTATCAGCAAAAGTTTAATTTACCAGATCCAAAA 2159
Query 2346 GATCTCCCGGACCAACTTAATTGGAAATGAAGTTCACAATGTATATGGAGATGGCAGACA 2405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 GATCTCCCGGAACAACTTAATTGGAAATGAAGTTCACAATGTATATGGAGATGGCAGACA 2219
Query 2406 GAGATCGCTCACATATTGGTTTGCAAAGTTGATATCAGAAGAAGACAACTATGCCGCAAC 2465
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2220 GAGATCCCTCACATATTGGTTTGCAAAGTTGATATCAGAAGGAGACAACTATGCCGCAAC 2279
Query 2466 TCTTCTGGTTAACTTGTTGACACAACTCGCAGAGAAGGAAGAGCAAGAGAATGATGTTAT 2525
|||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2280 TCTTCTAGTCAACTTGTTGACACAGCTTGCAGAGAAGGAAGAGCAAGAGAATGATGTTAT 2339
Query 2526 CTCGATTTTAAATCTAATTACCACAATTGTTTCTATATTCCCAACTGCCTCCAACCATTT 2585
||| ||||||||||| || | |||||||||||||||||||||||||||||||||| ||||
Sbjct 2340 CTCAATTTTAAATCTCATGAACACAATTGTTTCTATATTCCCAACTGCCTCCAACAATTT 2399
Query 2586 TTCTATGATTGGCATTGGCAATGTAGTTCATAGACTCGTTTCTGGTATT-AATAACTCAG 2644
|| |||| ||| ||||| | |||| |||||||||||||||||||| || | |||||||
Sbjct 2400 ATCCATGAATGGAATTGGGAGTGTAATTCATAGACTCGTTTCTGGT-TTCAGTAACTCAT 2458
Query 2645 CCTTGCGAACATCGTTTAAAACACTCCTTCTGCTAGTATTCAACATTTTAGCTTGTGTGC 2704
||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 2459 CCTTGGGAACATCGTTTAGAACACTCCTTCTGCTAGTATTCAACATTTTAACTTCTGTGC 2518
Query 2705 AACCTGG-AGTGCTAATGATTGATGAATCATGGGATGCTGTATCGATAAAGTTGTTAAAT 2763
|||| || |||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2519 AACC-GGCAGTGCTTATGATTGATGAATCATGGTATGCTGTATCGATAAAGTTGTTAAAT 2577
Query 2764 TTTTTGAGCTTGCGAGACACTGCCATAAAACAGAACCATGAAGATGTGATGGTGATTGGC 2823
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 2578 TTTTTGAGCTTGCGAGACACTGCTATAAAACAGAACCATGAAGATATGGTGGTGATTGGC 2637
Query 2824 ATTCTTTCATTGGTTCTGTACCACTCTTCAGATGGAGCACTTGTGGAAGCTTCGCGAAGT 2883
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 2638 ATTCTTTCTTTGGTTCTGTACCACTCGTCAGATGGAGCACTTGTGGAAGCTTCAAGAAAT 2697
Query 2884 ATACTACT-GAATTCGTACTTGGTATCAGCAATCAACACTGTGGTTGATGTAGCTTGCTC 2942
|| | | |||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2698 ATTGT-GTCGAATTCGTACCTGGTATCAGCAATCAACACTGTGGTTGATGTAGCCTGCTC 2756
Query 2943 AAAGGGTCCAGCACTGACTCAGTATCAGGATGAAACTGACATCGGGGAGGCTCTAGCATT 3002
||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||
Sbjct 2757 AAAGGGTCCAGCATTGACTCAGTGTCAGGATGAAACTAACATCGGAGAGGCTCTAGCATT 2816
Query 3003 CACGTTATC-TCTCTATTTTTTCTCATTAAGAAGTTTGCAGATTGTTCTAGCTGGAGCAG 3061
||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2817 CACGTTA-CTTCTCTATTTTTTCTCACTAAGAAGTTTGCAGATTGTTCTAGCTGGAGCAG 2875
Query 3062 TAGATTGGCAAACTTTCTTTGGCACGTCGACCAGCCTAGAAACACTACCCGTAGTCTGCA 3121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2876 TAGATTGGCAAACTTTCTTTGGCACGTCGACCAGCCTGGAAACACTACCCGTAGTCTGCA 2935
Query 3122 TCCATTGCCATAATTTGTGCAGGTTGATGCATTTTGGAGCACCACAAATCAAGCTTATCG 3181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 TCCATTGCCATAATTTGTGCAGGTTGATGCATTTTGGAGCACCACAAATCAAGCTTATCG 2995
Query 3182 CCTCTTATTGTCTTTTGGAGTTGCTCACTGGACTATCAGAACAGATTGACATaaaaaaaG 3241
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2996 CCTCTTATTGTCTTTTGGAGTTGCTCACTGGACTATCAGAACAGGTTGACATAAAAAAAG 3055
Query 3242 AGCAACCACGGTGTTCATCAAGTTACCTGAAATCAATGAAGACTGTTTTAGGTGGTCTTG 3301
|||||| || ||||||||| |||||||| |||||||||||| ||||||||||||||||||
Sbjct 3056 AGCAACTACAGTGTTCATCGAGTTACCTAAAATCAATGAAGGCTGTTTTAGGTGGTCTTG 3115
Query 3302 TATTCTGTGATGACATAAGAGTAGCGACAAACTCTGCGCTTTGTCTGTCCATGATTTTAG 3361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3116 TATTCTGTGATGACATAAGAGTAGCGACAAACTCTGCGCTTTGTCTTTCCATGATTTTAG 3175
Query 3362 GTTGGGAAGACATGGAAGGAAGAACAGAGATGCTTAAGACCAGCTCATGGTACAGGTTTA 3421
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3176 GATGGGAAGACATGGAAGGAAGAACAGAGATGCTTAAGACCAGCTCATGGTACAGGTTTA 3235
Query 3422 TTGCAGAAGAAATGTCAGTTTCCTTGGCCATGCCTTGTTCAGCATTTAGTGCATACGTGA 3481
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 3236 TTGCAGAAGAAATGTCAGTTTCCTTGGCCATGCCTTGTTCAGCATCAAGTACATACGTGA 3295
Query 3482 ACCACCACAAGCCAGCAGTCTATCTAACCGTTGCCATGCTAAGACTCAAGAACAAGCCAG 3541
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3296 ACCACCACAAGCCGGCAGTCTATCTAACCGTTGCCATGCTAAGACTCAAGAACAAGCCAG 3355
Query 3542 TGTGGCTGGGAACTGTTTTTGATGAGTCTTGCATCTCTAGCATGATTCAAAATCTGAATG 3601
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3356 TTTGGCTGAGAACTGTTTTTGATGAGTCTTGCATCTCTAGCATGATTCAAAATCTGAATG 3415
Query 3602 GGATAAATATCAGCAGAGAGATTGTAATATTGTTTCGAGAACTTATGCAGGCTGAGCTAT 3661
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 3416 GGATAAACATCAGCAGAGAGATTGTAATATTATTTCGAGAACTTATGCAGGCTGAGTTAT 3475
Query 3662 TGAATTCCCAGCAAGTGACCAAGTTGAATCGTGCATTCCAGGAATGTAGAAAACAAATGC 3721
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3476 TGAATTCCCAGCAAGTGACCAAGTTGGATCGTGCATTCCAGGAATGTAGAAAACAAATGC 3535
Query 3722 ACAGGAATGGAACTCGAGATGAGGCAGTTGAAGAACAAGTGCAACTGAAAATTTCCTCAA 3781
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 3536 ACAGGAATGGAACTCGAGATGAGACAGTTGAAGAACAAGTGCAACGGAAAATTCCCTCAA 3595
Query 3782 TCCATGATCATAGTGAGCTCTGCAACTATCTTGTTCATTTGATGGTATCTAATTCATTTG 3841
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3596 TCCATGATCATAGTGAGTTCTGCAACTATCTTGTTCATTTGATGGTATCTAATTCGTTTG 3655
Query 3842 GACACACAAGTGGAAGCCAAACATAAACCCAGAAGAAGAAACAGATTCTCGACGAAATGG 3901
||||| |||||| |||| ||||||| ||||||||||||||||||||||| || || ||||
Sbjct 3656 GACACCCAAGTGAAAGCGAAACATACACCCAGAAGAAGAAACAGATTCTTGATGAGATGG 3715
Query 3902 AACAATTCTTCGAGCTATTATCAGGGAATGATGTAACTGATACAAGACCGTGTAAGGTCT 3961
||||||||| ||||||| ||||| || || | || | | ||||||||| ||
Sbjct 3716 AACAATTCTCCGAGCTAATATCAAC-AA-GA-G-AA--G------G-CCGTGTAAGCCCT 3762
Query 3962 ATACAAGAAGAAACAAGACAAATGCAAACAGAGAGAATCGTGTAG 4006
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3763 ATACAAGAAGAAACAAGACAAATGCAAACAGAGAGAATCGTGTAG 3807
Score = 1598 bits (865), Expect = 0.0
Identities = 1004/1073 (94%), Gaps = 2/1073 (0%)
Strand=Plus/Plus
Query 1 ATGTTCTTCCTAGACTCACAGCAGCAAGACTCCGATCATCTCCTCCATGAATCTATGGCG 60
|||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTCTTCCAACACTCACAGTTGCAAAACTCCGATCATCTCCTCCATGAATCTATGGCG 60
Query 61 GATCCAGACCATCAATCTCTGTCCCCGCAATGCGCGAACGGCCACCGATCCACAATTTCT 120
||| || ||||||||||||| || |||| |||||| ||||||||||||||||||||||||
Sbjct 61 GATTCAAACCATCAATCTCTTTCGCCGCCATGCGCTAACGGCCACCGATCCACAATTTCT 120
Query 121 CTCCGCGCCGACCAAGGCGGCACATTCTGCTTCATCTGCTTCTCCAATCTCGTCTCCGA- 179
||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CTCCGCGACGACCAAGGGGGAACATTCTGCTTAATCTGCTTCTCCAATCTCGTCTCCGAT 180
Query 180 CCAACGCGTCCCCACCGTCCACGTCTCCTACGCGCTTCACCAGCTCTCAATTGCTCTCTC 239
|| |||| | ||||| || || ||||||||||||||||||||||||||||| ||| ||||
Sbjct 181 CC-ACGCATTCCCACTGTACATGTCTCCTACGCGCTTCACCAGCTCTCAATCGCTATCTC 239
Query 240 TGAACCTATCTTCCTCCGAACCCTACTCTCCTCTCATATCCACTTTCTCGTATCGCCTCT 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAACCTATCTTCCTCCGAACCTTACTCTCCTCTCATATCCACTTTCTCGTATCGCCTCT 299
Query 300 CGTCCACGCTCTCTCTTCGATTGATGATGCTCCAATCGCAATCCAGATTATGGATATGAT 359
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CGTTCACGCTCTCTCTTCGATTGATGATGCTCCAATCGCTATCCAGATTATGGATATGAT 359
Query 360 CTCTCTTCTCTGTTCCGCTGTGGAATCTTCAATCGGCGAGGATTTTGTGGAGAGAATCTC 419
||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 CTCTCTTCTCTGTTCCGTTGAGGAATCTTCAATCGGTGAGGATTTTGTGGAGAGAATATC 419
Query 420 CGATCAGCTCTCTTCTGGTGCTTTGGGTTGGAGCCGAAGACAGCTCCATATGCTTCACTG 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGATCAGCTTTCTTCTGGTGCTTTGGGTTGGAGCCGAAGACAGCTCCATATGCTTCACTG 479
Query 480 CTTTGGCGTTCTGATGAATTGTGAGAATATAGACGTCAATTCCCATATCAGAGATAAAGA 539
|||||| ||||| |||| ||||||||||||| | ||||||| |||||||||||||||||
Sbjct 480 CTTTGGTGTTCTTATGAGTTGTGAGAATATAAATATCAATTCTCATATCAGAGATAAAGA 539
Query 540 AGCTCTTGTTTGCCAACTCGTTGAAGGTCTTCAATTACCAAGTGAGGAGATCCGCGGTGA 599
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 540 AGCTCTTGTTTGCCAACTCGTTGAAGGTCTTCAGTTACCGAGTGAGGAGATCCGTGGTGA 599
Query 600 AATCCTTTTCGTTCTGTACAAATTTTCTGCTCTACAGTTCACAGAACAAAATGTTGATGG 659
||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATTCTTTTTGCTCTGTACAAGTTTTCTGCTCTACAGTTCACAGAACAAAATGTTGATGG 659
Query 660 CATTGAAGTTCTTTCTTCATTGTGTCCTAAGCTCTTATGCCTATCTTTGGAGGCTCTTGC 719
||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 AATTGAGGTTCTTTCTTTATTGTGTCCTAAGCTTTTATGCCTATCTTTGGAGGCTCTTGC 719
Query 720 AAAGACACAGAGAGATGATGTTCGCTTGAATTGTGTAGCCCTTTTGACCATCTTGGCCCA 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 720 AAAGACACAGAGAGATGATGTTCGCTTGAATTGTGTAGCCCTGTTGACCATCTTGGCCCA 779
Query 780 GCAAGGTCTTTTAGCAAATTCACATACAAATAATTTCAGCAGCATGAGCTTGGATGAAGT 839
||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 780 GCAAGGTCTTTTAGCAAATTCACATTCAAATAGTGCCAGCAGCATGAGCTTGGATGAAGT 839
Query 840 TGATGATGACCCTATGCAGACAGCTGAGACTCTAGTCGCCAGGCCTTGTTTAAATGTCTT 899
|||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||
Sbjct 840 GGATGATGACCCTATGCAGACTGCTGAGAATGTAGCCGCCAGGCCTTGTTTAAATGTCTT 899
Query 900 ATTTGCTGAGGCAATTAAAGGGCCGTTGCTTTCCACTGACAGTGAGGTGCAAATAAGAAC 959
||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 900 ATTTGCTGAGGCAATCAAAGGTCCGTTGCTTTCCACTGACAGCGAGGTGCAAATAAAAAC 959
Query 960 CCTTGATCTTATCTTCCACTACGTATCCCAAGAGAGTAAACCAAGCAAACAGATTCAAGT 1019
|||||||||||||||||||||| |||| |||||||||| |||||||||||| ||||||||
Sbjct 960 CCTTGATCTTATCTTCCACTACATATCTCAAGAGAGTACACCAAGCAAACAAATTCAAGT 1019
Query 1020 TATGGTAGACGAAAATGTTGCTGATTATATATTTGAGATACTGCGGTTATCAG 1072
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TATGGTAGAAGAAAATGTTGCTGATTATATATTTGAGATACTGCGGTTATCAG 1072
Score = 1465 bits (793), Expect = 0.0
Identities = 876/916 (96%), Gaps = 6/916 (1%)
Strand=Plus/Plus
Query 1128 AGCCGAGCAATCCTTTCGGAAGAGACTTGTTATTGGGTTTCCTTCAGTCATCCAAGTGCT 1187
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1071 AGCCGAGCATTCCTTTCGGAAGAGACTTGTTATTGGGTTTCCTTCAGTCATCCGAGTGCT 1130
Query 1188 TCACTATGTAGGTGAAGTTCCTTGCCATCCTTTTCAAATCCAGACACTGAAGCTTATTTC 1247
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1131 TCACTATGTAGGCGAAGTTCCTTGCCATCCTTTTCAAATACAGACACTGAAGCTTATTTC 1190
Query 1248 GAGCTGTATTTCAGATTTCCCTGGGATTGCTTCTAGTACTCAAGTTCAGGAAATTGCTCT 1307
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1191 GAGCTGTATCTCTGATTTCCCTGGGATTGCTTCTAGTTCTCAAGTTCAGGAAATTGCTCT 1250
Query 1308 GGTTCTGAAAAGGATGCTTGAAAGATATTATTCTCAGGAGATGGGATTATTTCCGGATGC 1367
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GGTTCTGAAAAAGATGCTTGAAAGATATTATTCTCAGGAGATGGGATTATTTCCGGATGC 1310
Query 1368 ATTTGCGATTATCTGCTCAGTCTTTGTTTCCCTTATGAAAACTCCATCTTTTGCGGAGAC 1427
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 ATTTGCTATTATCTGCTCAGTCTTTGTTTCCCTTATGAAAACTCCATCTTTTGGGGAGAC 1370
Query 1428 TGCAGATGTGTTAACATCATTGCAAGAATCCTTGAGACATGCTATTTTGGCCTCTCTTAG 1487
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1371 TGCGGATGTGTTAACATCATTGCAAGAATCCTTGAGACATTCCATTTTGGCCTCTCTTAG 1430
Query 1488 TCCCCCTGAGAAAGATTCAACCCAGATATTGCATGCAGTCTACTTACTCAATGAAGTATA 1547
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TCTCCCTGAGAAAGATTCAACCCAGATATTGCATGCAGTCTACTTACTCAATGAAGTATA 1490
Query 1548 TGCATATTGTACTGCACCAACATCCATAAACAAGACCAGTTGCATTGAGTTAAGACACTG 1607
|| |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1491 TGTGTATTGTACTGCATCAACATCCATAAACAAGACCATTTGCATTGAGCTAAGACACTG 1550
Query 1608 TGTTATAGACGTGTGTGCATCACATCTATTGCCGTGGTTTCT-TGCTGATGTCAACGAGG 1666
|||||||||||||||| |||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1551 TGTTATAGACGTGTGTACATCACATCTATTGCCTTGGTTTCTCT-CTGATGTCAACGAGG 1609
Query 1667 TCAATGAGGAAGCAACTCTTGGCATAATGGAAACTTTCCATTCTATTCTGCTACAGAATT 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TCAATGAGGAAGCAACTCTTGGCATAATGGAAACTTTCCATTCTATTCTGCTACAGAATT 1669
Query 1727 CAGATATTCAAGCCAAGGAGTTTGCAGAGAT-GCTTGTTTCAGCAGATTGGTTCAGCTTT 1785
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1670 CAGATATTCAAGCCAAGGAGTTTGCAGA-ATTGCTTGTTTCAGCAGATTGGTTCAGCTTT 1728
Query 1786 TCATTTGGATGTCTTGGAAACTTTTGTACGGCTAACATGAAACAGAGGATATATTTGATG 1845
|| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1729 TCGTTTGGATGTCTAGGAAACTTTTGTACAGATAATATGAAACAGAGGATATATTTGATG 1788
Query 1846 CTCAGTTCCCTTGTTGATGTTCTTCTCGAACAGAAAACGGCGTCACATATCAGAGATGCT 1905
|||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1789 CTCAGTTCCCTTGTTGATATACTTCTCGAACAGAAAACGGGGTCACATATCAGAGATGCT 1848
Query 1906 CTTCATTGTCTTCCTTCGGATCCACAAGATTTGCTGTTTTTGCTCGGGCAAGAC-AGTTC 1964
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 1849 CTTCATTGTCTTCCTTCTGATCCACAAGATTTGCTGTTTTTGCTCGGGCAAG-CTAGTTC 1907
Query 1965 CAATAATCAAGAATTGGCTTCTTGCCAGTCCGCAGCTCTGCTGATTTTCCATACCAGTTG 2024
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1908 CAATAATCAGGAATTGGCTTCTTGCCAGTCCGCAGCTCTGCTGATTTTCCATACAAGTTC 1967
Query 2025 GATGTACAATGACAGG 2040
||| ||||||||||||
Sbjct 1968 GATATACAATGACAGG 1983
> AT4G14170.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:8176324-8178142 REVERSE LENGTH=1819
Length=1819
Score = 145 bits (78), Expect = 4e-33
Identities = 101/112 (90%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 841 GATGATGACCCTATGCAGACAGCTGAGACTCTAGTCGCCAGGCCTTGTTTAAATGTCTTA 900
|||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 1746 GATGATGACCCTCTGCAGACAGCTGAGACTGTAGTCTCCAGGCCATGTTTAAATGTCTTA 1687
Query 901 TTTGCTGAGGCAATTAAAGGGCCGTTGCTTTCCACTGACAGTGAGGTGCAAA 952
|||||||||||||| ||| | || |||||||||||| |||| |||||| |||
Sbjct 1686 TTTGCTGAGGCAATCAAAAGTCCCTTGCTTTCCACTAACAGCGAGGTG-AAA 1636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 200316603399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5