BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330101

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G14147.2 | Symbols: ARPC4 | protein binding | chr4:8153807-8...   785    0.0  


> AT4G14147.2 | Symbols: ARPC4 | protein binding | chr4:8153807-8156790 
REVERSE LENGTH=940
Length=940

 Score =  785 bits (425),  Expect = 0.0
 Identities = 487/517 (94%), Gaps = 4/517 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAACTCATTACGGTTGTATCTAGCATGCATAAAAAATACACTCGAGGCAGCCATG  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  155  ATGGCAAACTCATTACGGCTGTATCTAGCATGCATAAAAAATACACTCGAGGCTGCCATG  214

Query  61   TGCTTACAGAACTTTCCTTGTCAAGAAGTTGAAAGGCATAATAAACCAGAGGTTGAACTA  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  215  TGCTTACAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAATAAACCAGAGGTTGAATTA  274

Query  121  AAGACAAGCCCAGAACTTTTACTAAATCCTGTATTGATATGCCGTAATGAGGCTGAAAAG  180
            ||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||||||
Sbjct  275  AAGACGAGCCCAGAACTTTTGCTAAATCCTGTTTTAATATGCCGAAATGAGGCTGAAAAG  334

Query  181  TGTTTAATAGAAACATCTATAAATTCACTCAGGATAAGCCTCAAGGTCAAACAAGCGGAT  240
            |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct  335  TGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGGTCAAGCAAGCGGAT  394

Query  241  GAACTTGAAAACATACTAACCAAAAAGTTCCTTAGATTTTTGTCCATGAGGGCAGAAGCT  300
            |||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct  395  GAACTTGAAAACATACTAACCAAAAAATTTCTCAGATTCTTGTCCATGAGGGCAGAAGCT  454

Query  301  TTTCAAGTACTGAGGAGGAAGCCAGTGCAGGGCTATGACATTAGCTTTCTAATAACAAAC  360
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  455  TTTCAAGTACTGAGGAGGAAGCCAGTGCAGGGCTATGACATAAGCTTTCTTATAACAAAC  514

Query  361  TACCACTGCGAGGAGATGCAGAAGCAGAAGCTAATCGATTTCATTATTCAGTTTATGGAG  420
            ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  515  TACCACTGCGAAGAGATGCAGAAACAGAAGCTAATTGATTTCATTATTCAGTTTATGGAG  574

Query  421  GCAAGTGATATAGAGAAAGAAATAAGAGACTTGAAGGAGTCAGTGAACACCAGAGGACGA  480
            |||||  ||||||||||||||||||| |||||||||||||||||||| || |||||| ||
Sbjct  575  GCAAG--ATATAGAGAAAGAAATAAGGGACTTGAAGGAGTCAGTGAATACAAGAGGAAGA  632

Query  481  CTCGTTGCGACAGAGTTTCT-GAAACAGTTCATGTAA  516
            |||||||| || ||||| || ||||||||||||||||
Sbjct  633  CTCGTTGCTACGGAGTT-CTTGAAACAGTTCATGTAA  668



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5