BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330120

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13968.1 | Symbols:  | Protein of unknown function (PD694200...   320    4e-87


> AT4G13968.1 | Symbols:  | Protein of unknown function (PD694200) 
| chr4:8069134-8069901 FORWARD LENGTH=270
Length=270

 Score =  320 bits (173),  Expect = 4e-87
 Identities = 244/276 (88%), Gaps = 14/276 (5%)
 Strand=Plus/Plus

Query  1    ATGGGATTCAAGAAT-ATTTCATCTCTTGTATCGGTGATGGTCTTTGCTCTTATCGTTCT  59
            ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct  1    ATGGGATTCAAGAATAATTT-ATCTCTTGTATCGGTGATGGTCTTTGCTCTTATCCTTCT  59

Query  60   ACCCATGATTTCAGGACAAAACATGCAATGTTTTTCAGGAATAGCATGTACAAAC-ACAG  118
             ||||||||||| ||||||| |||||||||||  |||||||||||||||||| || || |
Sbjct  60   CCCCATGATTTCTGGACAAACCATGCAATGTTACTCAGGAATAGCATGTACAGACGACGG  119

Query  119  ATACATGCAATGATTATTGCAAACCTAGAAATAACAACTTAGGAGGGGTTTGTCTT-GTT  177
              |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || 
Sbjct  120  G-ACATGCAATGATTATTGCAATCCTAGAAATAACAACTTAGGAGGTGTTTGTCTTCGTC  178

Query  178  G-GCCTCAACTGTTGTTGCTGCTATGTT-GCTGTCGCCGAATCTCAAGAGTCTTCCATT-  234
            | || | ||||||||||||||||| ||| | ||||| | ||||||||||||||||| || 
Sbjct  179  GCGC-T-AACTGTTGTTGCTGCTACGTTAG-TGTCGTCAAATCTCAAGAGTCTTCC-TTA  234

Query  235  TCTAAGAATAAC-AATAATGTATTAATTACTAATTA  269
            || ||| ||| | ||||||||||| |||||||||||
Sbjct  235  TCCAAGGATA-CGAATAATGTATTCATTACTAATTA  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5