BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330172
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35180.4 | Symbols: | Protein of unknown function (DUF1336)... 2001 0.0
> AT5G35180.4 | Symbols: | Protein of unknown function (DUF1336)
| chr5:13424418-13433018 FORWARD LENGTH=2787
Length=2787
Score = 2001 bits (1083), Expect = 0.0
Identities = 1160/1198 (97%), Gaps = 2/1198 (0%)
Strand=Plus/Plus
Query 1118 CATCCACTTGGGAAATCAGAAGCTTGAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1177
|||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1355 CATCAACTTGGGAAATCAAAAGCTTAAAAAAGCGCAGCGATGCAGAAACTCCAAGTTGTC 1414
Query 1178 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACTAGCT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1415 TTGTAACACACATGCTAGAAATCCACTCTAAACGTTGGTGCAAATGGAAGAGGACCAGCT 1474
Query 1238 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ACTCAAAGTTTGAAAAGACTATTCCATATGCATTACTCCTCCAAGTAGCAGGTCTGAAGG 1534
Query 1298 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTTCGCTACGGTTGTCCAGTCCA 1357
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1535 AGTACATTGGAGCAAACCCAGCCTTCAAGTATGAAACTTCCGCCACGGTTGTCCAGTCCA 1594
Query 1358 AGTTCCCAGATATCCCTAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1417
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 AGTTCCAAGATGTCCCCAATGGTGAATATGTAGATGAAGAAATGGAGGAGCAGTTTTATG 1654
Query 1418 ATGCCACGGACTCATCATCT-GATGAAGAGGATGAGGAGGAAAGCGATGAAGATGATGAA 1476
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1655 ATGCCACGGACTCATCATCTGGA-GAAGAGGATGAGGAGGAAAGCGATGACGATGATGAA 1713
Query 1477 GATCAGGACAATAAGGAGATTAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1536
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1714 AATCAGGACAATAAGGAGATAAAAGTTAAACTGAAGAATGTTTCATGGGCAATCGCTAGC 1773
Query 1537 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 TTATCTTTGAAGCGACCTAAAGCTCCAGGCGCAAGTAATGTATTAGACGCTAGTGTTGAT 1833
Query 1597 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAA 1656
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CCTGTGAGTATCGATCCAAGTCAGTTCCAAGGATCTCTGCGCAAAGGAAATGGTGATAAG 1893
Query 1657 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 GACTCAAATTGCTGGAATTCTCCTAGTGGCATGGGGTTTATGATCAGGGGAAAGACCTAC 1953
Query 1717 CTAAAAGATAATGCAAAGGTGATGGGTGGGGAGCCCCTTCTAACACTTGTATCAGTGGAT 1776
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1954 CTAAAAGATAATGCAAAGGTGATGGGTGGGCAGCCCCTTCTAACACTTATATCAGTGGAT 2013
Query 1777 TGGTTCAAAGTTGATAAAGCTGTAGATAACATCGCCCTGCATCCAAAATGTCTTGTCCAG 1836
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2014 TGGTTCAAAGTTGATAGTGCTGTAGACAACATCGCCCTGCATCCAAAATGTCTTATCCAG 2073
Query 1837 TCGGAACCTGGGAAAAAGCTGCCATTCATCCTAGTCATCAATCTTCAGGTACCAGCAAAG 1896
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2074 TCGGAACCTGGGAAAAAGCTCCCATTCATCCTAGTCATCAATCTACAGGTACCAGCAAAG 2133
Query 1897 CCTAACTATTGTCTGGTACTCTACTATGCTTCGGATCGTCCTGTAAGCAAGTCTTCATCC 1956
|||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||
Sbjct 2134 CCTAACTATTGTCTGGTACTCTACTATGCTGCGGATCGACCTGTAAACAAGACTTCATCC 2193
Query 1957 CTGGGAAAATTTGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTGATCCCA 2016
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2194 CTGGGAAAATTCGTGGATGGGAGTGACAGTTACCGCGACGCAAGATTTAAGCTAATTCCA 2253
Query 2017 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACTAAAGCCTGCCTGCTC 2076
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2254 AGTATTGTTCAGGGATATTGGATGGTCAAGCGGGCTGTTGGAACAAAAGCCTGCTTGCTC 2313
Query 2077 GGTAAAGCTGTAACCTGCAAGTACCTGAGGCAGGATAATTTTTTGGAGATTGATGTAGAT 2136
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2314 GGTAAAGCTGTGACCTGTAAGTACCTGAGGCAGGATAACTTTTTGGAGATTGATGTAGAT 2373
Query 2137 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2374 ATTGGATCATCGGCTGTTGCGAGGAGCGTTATTGGTCTGGTCCTTGGTTATGTCACAAGC 2433
Query 2197 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAACCGATTTGCCAGAGTAT 2256
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2434 CTCATTGTTGATCTCGCCATCTTGATTGAGGGAAAGGAGGAAAGCGATTTGCCCGAGTAT 2493
Query 2257 ATCCTTGGGACGGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2314
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 ATCCTTGGGACAGTTCGACTTAACCGAATAGAGCTGGACTCAGCCGTATCATTTGAGG 2551
Score = 1099 bits (595), Expect = 0.0
Identities = 712/766 (93%), Gaps = 18/766 (2%)
Strand=Plus/Plus
Query 1 ATGACATCGCCTGGATCGAAGAAACTTGTTACC-TC--CGACGGATCGGAGAAGAAAGTT 57
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 121 ATGACATCGCCTGGATCGAAGAAAGTTGTTACCACCGACGACGGATCGGAGAAGAAAGTT 180
Query 58 TCCGGTAATCTCGGAAAAGTTAGTTTTTCCGGAGATCTTAATGATAGTGGAAG-C--AGT 114
||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | |||
Sbjct 181 TCCGGCAATCTCGGAAAAGTAAGTTTTTCCGGAGATCTTAATCATAGTGGAAGCCATAGT 240
Query 115 ---AG-C-----CGTAGCAGCAGC-G-G-CGGCGGCGGAGAAGGAGGAACGTTTGAGTAT 162
|| | |||||||||||| | | ||| || || |||||||||||||||||||||
Sbjct 241 GGAAGCCATAGTCGTAGCAGCAGCAGCGCCGGAGGTGGTGAAGGAGGAACGTTTGAGTAT 300
Query 163 TTTGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 222
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGGATGGGTTTATCATTTGGGTGTGAATAAGATCGGTCATGAGTACTGTAATCTTCGT 360
Query 223 TTTCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCGCGAGAACCCA 282
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTCCTTTTCATTAGAGGCAAATATGTTGAGATGTATAAAAGAGATCCTCATGAGAACCCA 420
Query 283 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCTACAATGATGATTGAAGAGTTAGGA 342
||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 421 GACATTAAACCTATAAGGCGTGGTGTCATAGGGCCGACAATGGTGATTGAAGAGCTAGGA 480
Query 343 CGTCGCAAAGTGAATCGTGGGGATGTCTATGTCATAAGGTTCTATAACCGGTTGGACGAG 402
||||| ||||| |||| |||||||||||| || |||||||||||||||||||||||||||
Sbjct 481 CGTCGAAAAGTTAATCATGGGGATGTCTACGTTATAAGGTTCTATAACCGGTTGGACGAG 540
Query 403 TCAAGAAAAGGAGAAATTGCTTGTGCTACCGCTGGAGAAGCCGTGAAATGGGTTGAGGCT 462
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 541 TCAAGGAAAGGAGAAATTGCTTGTGCTACTGCTGGAGAAGCCCTGAAATGGGTTGAGGCT 600
Query 463 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTTTCGAGAGGTGGAAGCACAAGAACA 522
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 601 TTTGAGGAAGCAAAGCAGCAGGCTGAATATGCACTATCGAGAGGCGGAAGTACAAGAACA 660
Query 523 AAGCTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGACCTAGAGTACGACGTTAT 582
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 AAGTTAAGCATGGAGGCCAACATCGATCTGGAAGGACATCGGCCTAGAGTACGGCGTTAT 720
Query 583 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGACTCTTTTGAGGCAA 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 GCTTATGGATTAAAAAAGCTTATCCGAATTGGGCAAGGTCCAGAGTCTCTTTTGAGGCAA 780
Query 643 TCCTCTACCTTGGTTAATGATGTTAGGGGTGATGGTTTCTATGAGGGTGGTGACAACGGA 702
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 TCATCTACCCTGGTTAATGATGTCAGGGGTGATGGTTTCTATGAGGGTGGTGACAATGGA 840
Query 703 GATGCAATCGAGGCACATGAATGGAAGTGTGTTCGTACAATCAATG 748
||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 841 GATGCAATCGAGGCACACGAATGGAAATGTGTTCGTACAATCAATG 886
Score = 590 bits (319), Expect = 2e-167
Identities = 353/370 (95%), Gaps = 0/370 (0%)
Strand=Plus/Plus
Query 749 GTGTTAGGATTTTTGAAGATGTGGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 808
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 926 GTGTTAGGATTTTTGAAGATGTTGCTAACTTCAAGGCTGGTCGAGGAGTTCTTGTGAAAG 985
Query 809 CAGTTGCTGTAGTTGAAGCTAGTGCGGATACTGTGTTCGAAGTGCTTTTGAGCATTGACA 868
| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 986 CCGTTGCTGTAGTTGAAGCAAGTGCGGATACCGTGTTCGAAGTACTTTTGAACATTGACA 1045
Query 869 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATATG 928
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1046 AACATCAAAGATACGAGTGGGATGCAGTAACAGGTGATTCGGAAAAGATAGACTCATACG 1105
Query 929 AGGGCCACTATGATGTCATTTACTGCGTATACGATCCTAAATATCTTTCACGATGGCAAT 988
|||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
Sbjct 1106 AGGGTCACTATGATGTCATTTATTGCATATACGATCCTAAATATCTTTCGCGATGGCAGT 1165
Query 989 CGAAGAGAGATTTTGTCTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1048
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 CAAAGAGAGATTTTGTGTTCTCTAGACAGTGGGTTCGTGGGCAAGATGGGACATATACAA 1225
Query 1049 TCTTACAGTTTCCAGCATTGCATAAGAAACGGCCTCCAAAGTCTGGATATCGACGTACAG 1108
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1226 TCTTACAGTTTCCAGCAGTGCATAAGAAACGGCCTGCAAAGTCTGGATATCGACGTACAG 1285
Query 1109 AAATTACGCC 1118
|||| |||||
Sbjct 1286 AAATCACGCC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5