BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330181

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 | c...   610    4e-174


> AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 | 
chr5:13549343-13550124 REVERSE LENGTH=468
Length=468

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 423/469 (90%), Gaps = 2/469 (0%)
 Strand=Plus/Plus

Query  1    ATGGTTCAATGTGCCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAA  60
            |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGTTCAGTGCACCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAT  60

Query  61   ACAATCAAAGAAACACAACTTCAAACCCCCTTTGTCTGCGAG-AGAGCATGTGCTTGGAC  119
            | ||||||||||||||||||||||||||| |||||||||| | | | ||| || ||||||
Sbjct  61   ATAATCAAAGAAACACAACTTCAAACCCCATTTGTCTGCG-GCACAACATCTGGTTGGAC  119

Query  120  GCCAAACATGTCTTGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGTCTAACAT  179
            |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  120  GCCAAACATGTCATGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGCCTAGCAT  179

Query  180  CCCTCCCATACCCACCGGCTGGTCACGCTCGGTGTATATTAGAAGTGATTCCACAAAATT  239
            ||||||||||||||||||||||||||| || ||  ||||||||||||| |||||||||||
Sbjct  180  CCCTCCCATACCCACCGGCTGGTCACGTTCTGTCCATATTAGAAGTGAATCCACAAAATT  239

Query  240  TGCAGACGTATATTATTTTCCTCCATCAGGAGAGAGGCTACGATCATCAGCTGATGTCCG  299
             |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| || | 
Sbjct  240  CGCAGACGTCTATTATTTTCCTCCATCAGGAGAGAGGCTAAGATCATCGGCTGAGGTTCA  299

Query  300  AAGTTTCTTGGACAACCACCCAGAATATGTGAGAGCAGGGGTGAATCCTTCTCAGTTCTC  359
            ||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| |||||
Sbjct  300  AAGTTTCTTGGACAACCACCCAGAATACGTGAGAGAAGGGGTAAATCGTTCTCAATTCTC  359

Query  360  ATTTCAGTTGCCGAAACCCCTGGACGAGAACTATGTGAAGAAGCGCACTCGACCAGTGAA  419
            ||||||| | ||||||||  ||||||| ||||| ||||||||||| ||||||||||||||
Sbjct  360  ATTTCAGATACCGAAACCTTTGGACGATAACTACGTGAAGAAGCGTACTCGACCAGTGAA  419

Query  420  ACCAACAAAATCGTCAAAGGATAACAATTGTAAAAAGGACAAAAAATGA  468
            || || |||||| || ||||||||||||||  |||||| ||||||||||
Sbjct  420  ACGAAGAAAATCTTCGAAGGATAACAATTGCGAAAAGGGCAAAAAATGA  468



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5