BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg330181 Length=468 Score E Sequences producing significant alignments: (Bits) Value AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 | c... 610 4e-174 > AT5G35338.2 | Symbols: MBD12 | methyl-CPG-binding domain 12 | chr5:13549343-13550124 REVERSE LENGTH=468 Length=468 Score = 610 bits (330), Expect = 4e-174 Identities = 423/469 (90%), Gaps = 2/469 (0%) Strand=Plus/Plus Query 1 ATGGTTCAATGTGCCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAA 60 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTCAGTGCACCGATTGTAAGAAATGGAGGCTCATACCTTCGATGCAACACTACAAT 60 Query 61 ACAATCAAAGAAACACAACTTCAAACCCCCTTTGTCTGCGAG-AGAGCATGTGCTTGGAC 119 | ||||||||||||||||||||||||||| |||||||||| | | | ||| || |||||| Sbjct 61 ATAATCAAAGAAACACAACTTCAAACCCCATTTGTCTGCG-GCACAACATCTGGTTGGAC 119 Query 120 GCCAAACATGTCTTGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGTCTAACAT 179 |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 120 GCCAAACATGTCATGTAATGTTCCTCAAGATGGAACAACATGTGATACATGGCCTAGCAT 179 Query 180 CCCTCCCATACCCACCGGCTGGTCACGCTCGGTGTATATTAGAAGTGATTCCACAAAATT 239 ||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||| Sbjct 180 CCCTCCCATACCCACCGGCTGGTCACGTTCTGTCCATATTAGAAGTGAATCCACAAAATT 239 Query 240 TGCAGACGTATATTATTTTCCTCCATCAGGAGAGAGGCTACGATCATCAGCTGATGTCCG 299 |||||||| |||||||||||||||||||||||||||||| ||||||| ||||| || | Sbjct 240 CGCAGACGTCTATTATTTTCCTCCATCAGGAGAGAGGCTAAGATCATCGGCTGAGGTTCA 299 Query 300 AAGTTTCTTGGACAACCACCCAGAATATGTGAGAGCAGGGGTGAATCCTTCTCAGTTCTC 359 ||||||||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||| Sbjct 300 AAGTTTCTTGGACAACCACCCAGAATACGTGAGAGAAGGGGTAAATCGTTCTCAATTCTC 359 Query 360 ATTTCAGTTGCCGAAACCCCTGGACGAGAACTATGTGAAGAAGCGCACTCGACCAGTGAA 419 ||||||| | |||||||| ||||||| ||||| ||||||||||| |||||||||||||| Sbjct 360 ATTTCAGATACCGAAACCTTTGGACGATAACTACGTGAAGAAGCGTACTCGACCAGTGAA 419 Query 420 ACCAACAAAATCGTCAAAGGATAACAATTGTAAAAAGGACAAAAAATGA 468 || || |||||| || |||||||||||||| |||||| |||||||||| Sbjct 420 ACGAAGAAAATCTTCGAAGGATAACAATTGCGAAAAGGGCAAAAAATGA 468 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22253727121 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5