BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330185
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35390.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2950 0.0
> AT5G35390.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:13596873-13598976 FORWARD LENGTH=2034
Length=2034
Score = 2950 bits (1597), Expect = 0.0
Identities = 1863/1991 (94%), Gaps = 19/1991 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCCCATGCAGGCGCGTTCCTTCAGCATATACAACGTCATGGTACCACTAGTATGT 60
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 46 ATGCCTCCCATGCAGGCGCGTACCCTCAGCGTATACAACGTCATGGTACCACTAGTATGT 105
Query 61 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCGGATTCCGAGGCTATCCTCAAG 120
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 106 CTCCTCCTTTTCTTCTCCACACCCACTCATGGTCTTTCAGATTCTGAGGCTATCCTCAAG 165
Query 121 TTCAAGAAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCCTGGGATGCTAAAACT 180
|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 166 TTCAAGGAATCTTTAGTTGTTGGGCAGGAAAACGCGTTGGCCTCATGGAATGCTAAAAGT 225
Query 181 CCTCCCTGCACTTGGCCTGGTGTCTTGTGCAATAGCGGCTCCGTCTGGGGACTGCAGATG 240
||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 226 CCTCCTTGCACTTGGTCTGGTGTCTTGTGCAATGGCGGCTCCGTCTGGAGACTGCAGATG 285
Query 241 GAGAATTTGGAGCTTTCTGGTTCCATAGACATTGAGGCATTGTCGGGTTTGACATCCTTG 300
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 286 GAGAACTTGGAGCTTTCTGGTTCTATAGACATCGAGGCATTGTCGGGTTTGACATCCTTG 345
Query 301 AGGACTCTAAGCTTCATGAACAACAAGTTCGGAGGGCCATTCCCTGAGTTCAAGAAACTC 360
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 346 AGGACTCTAAGCTTCATGAACAACAAGTTTGAAGGGCCATTCCCTGACTTCAAGAAACTC 405
Query 361 GCTGCTCTCAAGTCACTCTACCTGTCTAACAATCAATTCGGAGGAGATATACCAGGGAAT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 406 GCTGCTCTCAAGTCACTCTACCTGTCAAACAATCAATTCGGAGGAGATATACCAGGGGAT 465
Query 421 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GCTTTTGAAGGTATGGGGTGGTTGAAGAAGGTCCATTTGGCACAAAACAAGTTTACCGGT 525
Query 481 GAAATCCCGACCTCTGTGGCCAAATTGCCCAAGCTCTTAGAACTGAGACTTGACGGGAAC 540
|||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 526 CAAATTCCGTCATCTGTGGCCAAATTGCCCAAGCTTTTAGAACTGAGACTTGACGGGAAC 585
Query 541 CAATTCACTGGACAAATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 600
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CAATTCACTGGAGAGATACCAGAGTTTGAACATCAGCTACACTTGTTAAACCTTTCAAAC 645
Query 601 AATGCATTAACAGGTCCAATCCCTGAGAGTCTCAGCATGATAGATCCAAAGGTGTTTGAA 660
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 646 AATGCATTAACAGGTCCAATACCAGAGAGTCTCAGCATGACAGATCCAAAGGTGTTTGAA 705
Query 661 GGTAATAAAGGCTTATGTGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTCTAGAGAG 720
||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 706 GGTAACAAAGGCTTATATGGAAAACCGCTGGAAACAGAATGTGATTCTCCTTATATAGAA 765
Query 721 CTTCCTCCACAACCTGGGGTACGACCTC-AATCATCATCAAGGGGGCCCCTCGTTATAAC 779
| ||||||||| ||| || |||||| | |||||||||||||||| || |||||||||||
Sbjct 766 CATCCTCCACAGTCTGAGGCACGACC-CAAATCATCATCAAGGGGACCTCTCGTTATAAC 824
Query 780 GGCAATAGTTGCGGCCCTGACAATACTCATAATCCTTGGAGTGATCATCTTGCTTAACCG 839
|||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 825 AGCAATAGTCGCGGCCTTGACAATACTCATAATCCTTGGAGTGATCTTCTTGCTTAACCG 884
Query 840 CAACTATAGGAATAAACAACCGCGTTTGGTGGTGGAAAACGGACCATCAAGTCTACAGAA 899
|| ||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 885 CAGCTATAAGAATAAAAAACCGCGTTTGGCGGTGGAAACCGGACCATCAAGTCTACAGAA 944
Query 900 GAAAACCAGCATCCGAGAAGCGGACCAAAGCCGGAGAGAAC-GACAGAAAGCCGACCATC 958
||||||| ||||||||||||| |||||||| || |||| || || ||||||||||||| |
Sbjct 945 GAAAACCGGCATCCGAGAAGCAGACCAAAGTCGTAGAG-ACAGAAAGAAAGCCGACCACC 1003
Query 959 GGAATGGCTCAGGCACTACTAAAAGGATGGGTACAGCAGCTGGAGTGGAGAACACAAAGC 1018
|||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1004 GGAAAGGCTCAGGCACTACTAAGAGGATGGGTGCAGCAGCTGGAGTGGAGAACACAAAGC 1063
Query 1019 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCAG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1064 TTTCATTCTTGAGGGAAGATAGGGAAAAATTTGACCTGCAAGATCTGTTGAAGGCTTCGG 1123
Query 1079 CTGAGATACTTGGAAGTGGATGTTTTGGAGCATCCTATAAAGCAGTGCTATCAAGCGGAC 1138
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1124 CCGAGATACTTGGAAGTGGATGTTTTGGAGCATCTTATAAAGCAGTGCTATCAAGCGGAC 1183
Query 1139 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAATAATGCAGGGAGGGATGAGTTTCAAG 1198
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1184 AAATGATGGTCGTGAAGAGGTTCAAGCAGATGAACAATGCAGGGAGGGATGAGTTTCAAG 1243
Query 1199 AGCACATGAAAAGATTAGGGAGGTTAAGGCACCATAATCTGCTTCCCATTGTGGCTTATT 1258
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1244 AGCACATGAAAAGATTAGGGAGGTTAATGCACCATAATCTGCTTTCCATTGTGGCTTATT 1303
Query 1259 ACTATAGGAAGGAGGAAAAGCTATTGGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTG 1318
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1304 ACTATAGGAAGGAGGAAAAGCTTTTAGTATGTGATTTTGCTGAGAGAGGAAGCTTGGCTA 1363
Query 1319 TTAATCTTCATAG---------G--A--AA--CCAAGTTTGGACTGGCCAACAAGATTGA 1363
||||||||||||| | | || ||||||||||||||||||||||||||||
Sbjct 1364 TTAATCTTCATAGTAATCAATCGTTAGGAAAACCAAGTTTGGACTGGCCAACAAGATTGA 1423
Query 1364 AGATCGTGAAAGGAGTTGCAAGGGGGCTGTTATATCTCCACCAAGATCTACCTAGACTAA 1423
|||||||||| |||||||||| |||| |||| |||||||||||||| |||||||| ||||
Sbjct 1424 AGATCGTGAAGGGAGTTGCAAAGGGGTTGTTCTATCTCCACCAAGACCTACCTAGCCTAA 1483
Query 1424 TGGCTCCACATGGTCATCTCAAATCCTCCAACGTTCTCCTCACCAAAACCTTTGAACCAC 1483
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1484 TGGCTCCACATGGTCACCTCAAATCCTCCAACGTTCTTCTCACCAAAACATTTGAACCAC 1543
Query 1484 TTCTCACAGACTATGGCTTAATTCCGGTGCTCAACCAAGAGAAGGCACAAGTGCATATGG 1543
|||||||||||||||| ||||||||| || |||||||||||||||||||| |||| ||||
Sbjct 1544 TTCTCACAGACTATGGATTAATTCCGTTGATCAACCAAGAGAAGGCACAAATGCACATGG 1603
Query 1544 CAGCCTATAGATCTCCAGAGTATTTGCAACACCGACGTATCACCAAGAAAACCGATGTTT 1603
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1604 CGGCCTATAGATCTCCAGAGTATTTGCAACATCGACGTATCACCAAGAAAACCGATGTAT 1663
Query 1604 GGGGGCTTGGCATACTCATCCTGGAGATCCTAACGGGAAAATTCCCACCTAATTTCTCAC 1663
|||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1664 GGGGGCTTGGCATACTTATCTTGGAGATCCTAACGGGAAAATTCCCGGCTAATTTCTCAC 1723
Query 1664 AAGGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGAGTAGGGGCAC 1723
|| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1724 AAAGTAGTGAAGAGGATTTAGCGAGTTGGGTGAACTCGGGTTTCCATGGGGTATGGGCAC 1783
Query 1724 CAAATTTGCTTGATAAGGGGATGGGCAAGACAAGCCATTGTGAAGGACAGATTCTTAAAC 1783
||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1784 CAAGTTTGTTTGATAAGGGTATGGGGAAGACAAGCCATTGTGAAGGACAGATTCTCAAAC 1843
Query 1784 TCTTGAGGATCGGATTGAGCTGTTGTGAACCCGATGTGGAGAAAAGGTTGGACATAGGAC 1843
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1844 TCTTGACGATCGGATTGAACTGTTGTGAACCCGACGTGGAGAAAAGGTTGGACATAGGAC 1903
Query 1844 AGGCTGTGGAGAAGATTGAAGTGTTGAAGGAGCGGGAAGGGGATGATGACGACTTCTACT 1903
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1904 AGGCTGTGGAGAAGATCGAAGAGTTGAAGGAGCGAGAAGGGGATGATGACGACTTCTACT 1963
Query 1904 CAACGTATGTGAGTGAAACTGATGGGAGGTCATCTAAAGGAGTGTCAAGCGAGAGTATCA 1963
||||||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||
Sbjct 1964 CAACGTATGTGAGTGAAACTGATGGTAGGTCGTCTAAAGGAGAGTCATGCGAGAGTATCA 2023
Query 1964 GCTTTGCATGA 1974
|||||||||||
Sbjct 2024 GCTTTGCATGA 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5