BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330190
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35520.1 | Symbols: MIS12, ATMIS12 | minichromosome instabil... 987 0.0
> AT5G35520.1 | Symbols: MIS12, ATMIS12 | minichromosome instability
12 (mis12)-like | chr5:13701396-13703125 FORWARD LENGTH=917
Length=917
Score = 987 bits (534), Expect = 0.0
Identities = 659/720 (92%), Gaps = 6/720 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAAGCAAAAGCGAGGCAGTGTTCGATTCCATGAATCTAAATCCTCAGATTTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGAAGCAAAAGCGAGGCAGTGTTCGATTCCATGAATCTAAATCCTCAGATTTTC 60
Query 61 ATTAACGAAACAATCAACTCCGTCGAAGATTATGTTGACGCA-GCTTTTGATTTCTATGG 119
|| |||||| ||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct 61 ATCAACGAAGCAATCAACTCCGTCGAAGATTATGTCGAC-CAAGCTTTTGACTTCTATGC 119
Query 120 CCGAGAAGCATCCAAATTTCTCAAAATCAACGGATCTGTTAAACAAAAGTCACAAGATTT 179
||| || |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 120 CCGTGATGCATCCAAATCTCTCAAAATCAAAGGATCTGATAAACAAAAGTCACAAGCTTT 179
Query 180 ATCAAATGGTATTGAACGTGTTCGTGGTTTGATACAATCGGTTATTGACAAGCGTTTGGA 239
|||||||||||||| ||||||||||||||| ||| ||| || || ||||| |||||| |
Sbjct 180 ATCAAATGGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATCGACAATCGTTTGAA 239
Query 240 ATTGTGGGAGAGCTATTGTGTTCGATTCTGTTTCGCAGTTCCTGATGGATTTGTGTTGCC 299
||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATTGTGGGAAAGCTATTCTCTTCGATTCTGTTTCGCAGTTCCTGATGGATTTGTGTTACC 299
Query 300 AAAGAGTG-GCGAGCCGTCGCCCATTCATCAGGAAGGGTTATGTGATCTAGAGTTGGATG 358
|||||||| | ||| | ||| | | |||||||| ||||||| ||||||||| || ||||
Sbjct 300 AAAGAGTGAG-GAGTCTTCGTCTGTGCATCAGGATGGGTTATATGATCTAGAATTAGATG 358
Query 359 CAGAATTGGATTCTTTGAGGGATAAGCTTAATTTGGTAGGAAAGAGGTCTGTTGAGCTGG 418
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 359 CAGAATTGGATTCTTTAAGGGATAAGCTTAATGTGGTGGGAAAGAGGTCTGTTGAGCTTG 418
Query 419 ACTCCGAGCTTCAGGCTTTAGAAAGA-GCCTCGGTTTCGAGGGAACGGTCTGTGAGACTC 477
|||| ||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||
Sbjct 419 ACTCTGAGCTCCAGGCTTTAGAAAGAAGC-TCGGTTTCGAGGGAACGGTCTTTGAGACTC 477
Query 478 GTTAATGAGGCTTTGGAGCGTTATGATGAGTCGTCTGTCGATGAAATGTTCAAAGAGATG 537
|||||||| |||||||||| |||||||||||| ||| | |||||||| ||||||||||||
Sbjct 478 GTTAATGAAGCTTTGGAGCTTTATGATGAGTCTTCTATGGATGAAATATTCAAAGAGATG 537
Query 538 GCAAAAATGGCATCGGAACTTCGTGCAAGCGTGGATAGGCTGAAAACAAGAAGAATGGAA 597
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 538 ACGAAAATGGCATCGGAACTTCGTGCAAGCGTGGAGAGGCTGAAAACAAGAAGAATGAAA 597
Query 598 GCCAGTGAAAGCGCTAAAGTAAAGAGGCTAAAGAACCATGGCAAAGAGTTTTCGGCAATG 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 GCAAGTGAAAGCGCTAAAGTAAAGAGGCTAAAGAACCATGGCAAAGAGTTTTCAGCAATG 657
Query 658 ACTTTTGATGGAAAGGTTGAAGACCTCGAAAAGTTTCAAGCCGAGTTAAAGAAGATGTGA 717
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 ACTTTTGATGGAAAGCTTGAAGACCTCGAAAAGTTTCAAGCCGAGTTAAGGAAGATGTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34762029724
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5