BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330218
Length=3363
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase f... 4916 0.0
> AT5G35930.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr5:14066992-14074751 REVERSE LENGTH=3594
Length=3594
Score = 4916 bits (2662), Expect = 0.0
Identities = 3163/3399 (93%), Gaps = 58/3399 (2%)
Strand=Plus/Plus
Query 11 GAAACCGAGGCAAGTCGGAGAATTGTTGCATTTCTCATAAATTCG-T--TGCAGCCTCCA 67
|||||||||||||| || ||||||| ||||||||||||||||||| | |||||||||||
Sbjct 1 GAAACCGAGGCAAGCCGAAGAATTGCTGCATTTCTCATAAATTCGTTGATGCAGCCTCCA 60
Query 68 AAAACCCTCATCAAATCGCCGTGATTCAAGCTTCAGGCTTGACGGCGAGGAGGATTAGGT 127
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 61 AAAACCCTCATCAAATCGCCGTGATTCAAGCTTCCGGCTTGACGGCGAGGAGCATTAGGT 120
Query 128 CGGAATCAGCTGAACCTTTTGTTTACGACGGAGACAAATGTTTCACGTTCGCCGAGCTTT 187
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CGGAATCAGCTGCACCGCCTGTTTACGACGGAGACAAATGTTTCACGTTCGCAGAGCTTT 180
Query 188 CTTCATCCATTGATTCCCTCACCTCTCGTCTCCGTCGTATCCTCAGTGATGATGATTCTC 247
|||||||||||||||| |||||||||||||||| ||||||||||||| | ||||||||||
Sbjct 181 CTTCATCCATTGATTCACTCACCTCTCGTCTCCATCGTATCCTCAGTAACGATGATTCTC 240
Query 248 AAGAGGCTGGTTCAGATGTTGTATATATGCCAAAGGTAGTGGCTTTATATATGCCACCAT 307
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTGGCTGGTTCAGATGTTGTGTATATGCCAAAGGTAGTGGCTTTATATATGCCACCAT 300
Query 308 CAGTTGAATATATTATAAGTGTGTTCTCTGTTTTGAGGTGTGGAGAAGCTTTTTTACCTT 367
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGTTGAATATGTTATCAGTGTGTTCTCTGTTTTGAGGTGTGGAGAAGCTTTTTTACCTT 360
Query 368 TAGATCCTA-CATGGCCAAGAGAAAGGGTTTTGTCTCTTATTTCCTCTTCAAATGCTTCT 426
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TAGATCC-ATCATGGCCAAGAGAAAGGGTTTTGTCTCTTATTTCCTCTTCAAATATTTCT 419
Query 427 CTTGTTATTGC-T-T---TAG-----AG-AG-ATCACATTGGCTTGTGGAAACCAAGGTC 474
||||||||||| | | | | | | ||| |||||||||||||||| || ||
Sbjct 420 CTTGTTATTGCTTGTGGCTTGTCTTCTGTGGAATCGCATTGGCTTGTGGAAAGAAATGTT 479
Query 475 TGCCCTGTATTACTGTTTTCAATGGATGAGAAATTGAGTGAGGAAACTGGTTGCTCAAGC 534
|||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 TGCCCTGTGTTATTGTTTTCAATGGATGAGAAATTGAGTGTGGAAACTGGTTGCTCAAGC 539
Query 535 TTTGTTTGGCCTTGCAAGAAACAGAGGCAGAGAAAATTTTGTTATCTTATGTATACTTCA 594
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTGTTTGGCCTTGCAAGAAAGAGAGGCAGAGAAAATTTTGTTATCTTATGTATACTTCA 599
Query 595 GGATCTACTGGGAAGCCTAAAGGAGTTTGTGGCACTGAGCAAGGACTTTTAAATCGCTTC 654
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 600 GGATCTACTGGGAAGCCTAAAGGAGTTTGTGGTACTGAGCAAGGACTTTTAAATCGTTTC 659
Query 655 GTGTGGATGCAAGAGCTCTATCCTGTTGTTGGAGAGCAGCGATCGGCTTTCAAGACTTCA 714
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 CTATGGATGCAAGAGCTCTATCCTGTTGTTGGAGAGCAGCGATTTGCTTTCAAGACTTCA 719
Query 715 GTTGGTTTTATTGATCATCTGCAGGAGTTTCTTGGCCCTATTCTTAATTCAACCCCCTTA 774
|||||||||||||||||| | |||||||||||||| ||||||||| ||| ||| |||||
Sbjct 720 GTTGGTTTTATTGATCATATACAGGAGTTTCTTGGTGCTATTCTTAGTTCCACCGCCTTA 779
Query 775 GTCATCCCTCCATTTACTCTACTCAAAGAGAATATGACATCCATCATTGATTTTTTGGAG 834
|||||||||||||| || ||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 780 GTCATCCCTCCATTCACACTACTAAAAGAAAATATGATATCCATCATTGATTTTTTGGAG 839
Query 835 GTGTATTCTATCAGCAGACTCCTAGCTGTCCCATCGATGATCAGAGCTATTCTTCCTACT 894
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GAGTATTCTATCAGTAGACTCCTAGCTGTCCCATCGATGATCAGAGCTATTCTTCCTACT 899
Query 895 TTACAACATCGTGG--AC-ACAATAAGCTTCAAAGTAGCTTGAAGCTGGTAGTTTTAAGT 951
|||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct 900 TTACAACATCGTGGACACAACAATAAGCTTCAAAGTTGCCTGAAGCTGGTAGTTTTAAGT 959
Query 952 GGCGAACCCTTTCCCGTGAGCCTGTGGGATTCACTTCACAGCCTACTTCCTGAAACATGT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGCGAACCCTTTCCCGTGAGCCTGTGGGATTCACTTCACAGCCTACTTCCTGAAACATGT 1019
Query 1012 TTTCTGAATCTATATGGGAGTACAGAGGTATCAGGGGACTGCACTTATTTCGACTGCAGT 1071
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 TTTCTGAATCTATATGGGAGTACAGAGGTATCAGGGGACTGCACTTATTTTGACTGCAGT 1079
Query 1072 GGGTTGCCAAGAATCTTGAAGACCGAGGAGATTGGTAGTGTTCCTATTGGCAAGCCAATT 1131
| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1080 GAGTTGCCAAGACTCTTGAAGACCGAAGAGATTGGTAGTGTTCCTATTGGCAAGTCAATT 1139
Query 1132 TCGAATTGCAAAGT-GTTACTTTTTGGGGACGAAGATAAACCTTATGAGGGAGAAATATG 1190
|| ||||||||||| || |||||| |||||||||||||||||||| || |||||||| ||
Sbjct 1140 TCCAATTGCAAAGTTGT-ACTTTTGGGGGACGAAGATAAACCTTACGAAGGAGAAATTTG 1198
Query 1191 TGTTGGTGGCCTCTGTATTTCACAAGGGTACATGCATTCCTCGATAGAGTCTCAAGGCTA 1250
|||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 TGTTAGTGGTCTCTGTCTTTCACAAGGGTACATGCATTCCTCGATAGAGTCTGAAGGCTA 1258
Query 1251 CGTGAAGCTACATAATAATAAATCGCTCTGTAATCATTTAACGAATGATTGTGGAAGCGA 1310
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 1259 CGTGAAGCTACATAATAAC---TCACTCTGTAATCATTTAACAAATGATTGTGGAAGCCA 1315
Query 1311 GCTTTATTATAGAACGGGTGATTATGGACGACAGCTTTCTAGTGGTGATTTGATTTTTAT 1370
||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1316 GCTTTATTATAGAACTGGTGATTATGGAAGACAACTTTCTAGTGGTGATTTGATTTTTAT 1375
Query 1371 TGGGAGAAGGGATCGAACTGTTAAACTCAATGGAAAACGCATGGCCCTTGAAGAGATTGA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGGGAGAAGGGATCGAACTGTTAAACTCAATGGAAAACGCATGGCCCTTGAAGAGATTGA 1435
Query 1431 AACAACTCTAGAACTAAATCCAGATGTTGCTGAAGCTGTTGTTCTACTTAGCAGAGATGA 1490
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1436 AACAACTCTAGAACTAAATCCAGATATTGCTGAAGCTGTTGTTCTACTTAGCAGAGATGA 1495
Query 1491 GAAGGAGCTTGCTTCACTTAAGGCCTTTTTAGTACTGAACAAGGAAAGCATTTCCGGTGA 1550
|| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 1496 GACGGAGCTTGCTTCACTCAAGGCCTTTGTAGTACTGAACAAGGAAAGCAACTCCAGTGA 1555
Query 1551 TGGTATCATATTTTCTATCAGAAATTGGATGAGCGAAAAACTTCCTACGGTGATGATTCC 1610
||||||||||||||||||||||||||||||| | | |||||||||| |||||||||||||
Sbjct 1556 TGGTATCATATTTTCTATCAGAAATTGGATGGGTGGAAAACTTCCTCCGGTGATGATTCC 1615
Query 1611 TAACCATTTTCTTTTGGTGGAGTCACTGCCACTTACTGCAAGTGGAAAAGTTAATTATGA 1670
|||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||||||
Sbjct 1616 TAACCATTTTGTTTTGGTGGAGAAACTGCCACTTACTTCAAGTGGAAAAGTTGATTATGA 1675
Query 1671 AGCACTAGCAAGGTTGAAATGTCCTAAAACCCTTGCTCAAGATATGATGCATAGCAATGG 1730
|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 1676 AGCACTAGCAAGGTTGAAATGTCCTACAACCGGTGCTCAAGATATGATGCAGAGCAATGG 1735
Query 1731 AACTAATAGTCTACTGCAAACTATTAAAAAGGCCGTCTGTGATGCATTAGTGGTCAAAGA 1790
|||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1736 AACTAATAGTTTACTGCAAAATATTAAAAAGGCTGTCTGTGATGCATTACTGGTCAAAGA 1795
Query 1791 AGTTTTAGACGATGATGATTTCTTTGCGATTGGTGGAGACTCTTTAGCCGCAGCACATCT 1850
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1796 AGTTTCAGACGATGATGATTTCTTTGCGATTGGGGGAGACTCTTTAGCCGCAGCGCATCT 1855
Query 1851 TTCTCATAGTCTTGGTATTGATATGAGATTGATTTACCAATTTCGAAGTCCATCTAGGCT 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TTCTCATAGTCTTGGTATTGATATGAGATTGATTTACCAATTTCGAAGTCCATCTAGGCT 1915
Query 1911 TTTGATCTGTCTGTCAGAGAAGGAAGGTAAGTTAAGAGAAGATACGCAACACAACACCAC 1970
|||||||| |||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 1916 TTTGATCTATCTGTCAGAGAAAGAAGGGAAGTTAAGAGAAGATATGCAACACAACACCAC 1975
Query 1971 TCAGAAACTAGACCACAAGACAGAGAGTCAGAATGGTAATGGGTTGGTTAGTAGAACTGT 2030
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TCAGAAACTAGACCACAAGATAGAGAGTCAGAATGGTAATGGGTTGGTTAGTAGAACTGT 2035
Query 2031 TCCACGTCATTCTGGTGTTACATCAAGCCCAACGCCTTCAGGAAT-GCAGTGTGAGAAGA 2089
||||| ||||||||||||||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct 2036 TCCACTTCATTCTGGTGTTACATCAGGCCCAACACCTTCAA-AATTGCAGTGTGAGAAGA 2094
Query 2090 ATAATTCCCCAAAGCGATTGAAAATTGATTCC-AAAATTTTTTCTCCCAAAAC---GAAA 2145
|||||||||||||||||||||||||||||| | |||| |||| ||||||||| ||||
Sbjct 2095 ATAATTCCCCAAAGCGATTGAAAATTGATTACGAAAAGTTTT-CTCCCAAAAGAATGAAA 2153
Query 2146 GAAAAGAAATCATGGGATTCAGGATTTTCTCAAACACAATGTGCATTCAGTCGGTGCAAT 2205
||||| |||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 2154 GAAAATAAATTATGGGATTCAGGATTTTCTCAAATACAATGTGCATTTAGTCGTTGCAAT 2213
Query 2206 AAGGTATATTCTCC-GAACTCATGTAGTAATGAAGAGGCAAACCGAGAAAACTGGTCGGT 2264
|||||| ||||||| || |||||||||||||||||||||||||||||| |||||||| |
Sbjct 2214 AAGGTACATTCTCCAGAG-TCATGTAGTAATGAAGAGGCAAACCGAGAATACTGGTCGTT 2272
Query 2265 GGAGATTCCAAGGAACCAAATGGTCTCTATGCAAGAGATATGGAAAGTTCATATGGAGTC 2324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 GGAGATTCCAAGGAACCAAATGGTCTCTATGCAAGAGATATGGAAAGTTCATATGGAGTC 2332
Query 2325 TTGTGTAGATGCCTCGCCCCTAGTTGTGTTGAAGGATTCGAAAACTTATCTATTCATTGG 2384
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2333 ATGTGTAGATGCCTCCCCCCTAGTTGTGTTGAAGGATTCGAAAACTTATCTATTCATTGG 2392
Query 2385 GTCTCACTCACGTAAATTTTCGTGCATTGACGCCAAAAGTGGCTCTATATATTGGGAGAC 2444
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2393 GTCTCACTCACGTAAATTTTCGTGCATTGACGCCAAAAGTGGTTCTATGTATTGGGAGAC 2452
Query 2445 CACTCTAGAGGGAAGGGTCGAAGGTTCAGCCATGGTTGTTGGTGATTTTAGTCAGGTCGT 2504
|| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2453 CATTCTAGAGGGAAGGATCGAAGGTTCAGCCATGGTAGTTGGTGATTTTAGTCAGGTCGT 2512
Query 2505 TGTTGGATGCTACAAAGGAAAATTATATTTTTTAGAATTCTCAACTGGAAGCTTATGTTG 2564
| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 2513 TATTGGATGCTACAAAGGAAAATTATATTTCTTAGATTTCTCAACGGGAAGCTTATGTTG 2572
Query 2565 GACATTCCAAGCATGTGGCGAGATAAAGTGCCAACCTGTTGTGGATGCATCTTCGCAACT 2624
|| ||| ||||||||||| |||||||||||||| ||||| |||||| |||||||||||||
Sbjct 2573 GAAATTTCAAGCATGTGGTGAGATAAAGTGCCAGCCTGTGGTGGATACATCTTCGCAACT 2632
Query 2625 GATATGGTGCGGATCACATGACCACACTCTTTATGCCCTTGACTATAGGAGTCAACGTTG 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2633 GATATGGTGCGGATCACATGACCACACTCTTTATGCCCTTGACTATAGGAGTCAATGCTG 2692
Query 2685 TGTTTATAAGCTGCAATGTGGTGGGAGCATATTTGCTTCACCTTTAATTGATGAGGGTCA 2744
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 2693 TGTTTATAAGCTGCAATGTGGTGGGAGCATATTTGCTTCGCCTGCAATTGATGAGGGTCA 2752
Query 2745 TAGTTTACTATATGTGGCTTCTACAAGTGGTCACGTGACAGCTGTATCAATAGAGGATTT 2804
||||| ||| || ||||| ||||| ||||||| ||||| ||||||||||||| ||||||
Sbjct 2753 TAGTTCACTTTACGTGGCCTCTACCAGTGGTCGCGTGATAGCTGTATCAATAAAGGATTC 2812
Query 2805 GCCATTCCACACCTTGTGGCTACTTGA-TCTAGAAGCACCGATTTTTGGTTCCCTAAGCA 2863
|||||||||||||| |||||| |||| | |||| ||||||||||||||||||||| |||
Sbjct 2813 CCCATTCCACACCTTATGGCTATTTGAAT-TAGAGGCACCGATTTTTGGTTCCCTATGCA 2871
Query 2864 TTACCCCGA-CAAG-C----CGA-A---GC-G-TT-G---ATGGCCAAGTTATCGCAATG 2907
||||||| | ||| | || | || | || | |||||||||| |||||||||
Sbjct 2872 TTACCCC-ATCAACTCAAAACGTTATTTGCTGCTTAGTTGATGGCCAAGTGATCGCAATG 2930
Query 2908 AGTACGTCTGGAACTATTATTTGGAGGTATAGGACTGGTGGACCAATATTTGCTGGGCCT 2967
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2931 AGTCCGTCTGGAACTATTATTTGGAGGTATAGGACTGGTGGACCAATATTTGCTGGACCT 2990
Query 2968 TGCATGTCACATGTGCTTCCTTCTCAGGTGCTTGTGTGCTGTAGAAATGGAAGTGTTTAT 3027
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2991 TGCATGTCACATGTGCTTCCTTCTCAGGTGCTTGTGTGCTGTAGAAATGGATGTGTTTAT 3050
Query 3028 TCACTAGAACCGGAATCTGGGTGTCTTGTGTGGGAATACAATATTGGGGACCCGATCACA 3087
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 3051 TCCCTAGAACCGGAATCTGGGTGTCTTGTGTGGGAAGACAATATTGGGGACCCGATCACA 3110
Query 3088 GCATCTGCATACATTGATGAGAATCTGCATTTTGAATCGCATCAACTGCTTGCATCAGAC 3147
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3111 GCATCTGCATACATTGATGAGAATCTGCATTTTGAATCGCATGAACTGCTTGCATCAGAC 3170
Query 3148 AGGTTGGTGACTGTAAGCTCGAGCTCAGGAAAAGTTCATGTCCTTCGTGTGAGAACCAAC 3207
||||||||||||||| |||| ||||| |||| |||||||||||||||||||||| || |
Sbjct 3171 AGGTTGGTGACTGTATGCTCAAGCTCGGGAAGAGTTCATGTCCTTCGTGTGAGACCCT-C 3229
Query 3208 CA--C--AGCAGAGATTCGCATGACTCAAAAGTAGGAGAAATCGCGAGGCTGGAGTTGCA 3263
|| | ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||
Sbjct 3230 CATTCTCAGCAGAGATTCACATGACTCAAAAGTAGGAGAAATCACGAGGATGGAGTTGCA 3289
Query 3264 GGCAGACATTTTCTCTTCACCAGTGATGATCGGTGGCCGGATATTTGTTGGCTGTCGTGA 3323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3290 GGCAGACATTTTCTCTTCACCAGTGATGATCGGTGGCCGGATATTTGTTGGCTGTCGTGA 3349
Query 3324 CGACTATGTGCATTGCCTCTCTCTTGAGAGTTGCAGGTA 3362
|||||||||||| ||||||||||||||||||||||||||
Sbjct 3350 CGACTATGTGCACTGCCTCTCTCTTGAGAGTTGCAGGTA 3388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167356921848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5