BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330235
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 584 7e-166
AT3G42560.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 128 1e-28
> AT5G36300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:14320668-14322426 FORWARD LENGTH=883
Length=883
Score = 584 bits (316), Expect = 7e-166
Identities = 393/429 (92%), Gaps = 9/429 (2%)
Strand=Plus/Plus
Query 879 ACAGTTTGGAAGTTTCCAAGATGTCGAGGAACTTGTGGGTAAGCTCAAGTCACAGGGTGT 938
||||||||| |||||| | ||| | | |||||||||||||||||| ||||| || |||||
Sbjct 420 ACAGTTTGGGAGTTTCGAGGATATTGGGGAACTTGTGGGTAAGCTAAAGTCTCAAGGTGT 479
Query 939 CGCTCCTTCAGCCAATCTGTTTTGTACTTTGGCAAATGCATATGCTCAGCAGGGACTGTA 998
|||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| |
Sbjct 480 TGCTCCTTCTGCTAATTTATTTTGCACTTTGGCAAATGCATATGCTCAGCAGGGACTATG 539
Query 999 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAACGAGGGGATTGAACCAAACTTGAT 1058
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAATGAGGGGATTGAACCAAACTTGAT 599
Query 1059 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 659
Query 1119 TATTTATCACCATATTAAAGAAAGCG---G-ATTCACCCCCGATGTGGTTACCTATAGTA 1174
||||||||| ||||||||||||| || | ||||||||| |||||||||||||||||||
Sbjct 660 TATTTATCATCATATTAAAGAAACCGTATGGATTCACCCC-GATGTGGTTACCTATAGTA 718
Query 1175 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAAAGGT-T---CCAGAAATATTC 1230
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 719 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAATGGTATGTTCCAGAAATATTC 778
Query 1231 AGGGAAATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACTATTGCAAAAT 1290
|||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||
Sbjct 779 AGGGAAATGGAAGCTTCTGGGTGTACAACAGATCGGAAAGCAAAACAATTATTGCAAAAT 838
Query 1291 GCTTTTATG 1299
||| |||||
Sbjct 839 GCTATTATG 847
Score = 335 bits (181), Expect = 7e-91
Identities = 214/230 (93%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 366 AGAGGAATCGTGGCGTGTGGTTAATGAGATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 425
||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 198 AGAGGTATCGTGGCGTGTGGTTAACGAAATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 257
Query 426 TGTTTATGGGAAGATTATTCGTATTTATAGAGACAATGGGATGTGGAAGAAAGCTTTAGG 485
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 258 TGTTTATGGGAAGATTATTCGTATTTATAGAGATAATGGTATGTGGAAGAAAGCTTTAGG 317
Query 486 GATTGTAGACGAGATTAGGGAGATTGGTTTGCCAATGGATGTGGAGATATACAATAGCAT 545
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 318 GATTGTAGAAGAGATTAGGGAGATTGGTTTGCCTATGGATGTGGAGATATACAATAGTGT 377
Query 546 TATCGATACATTTGGTAAGTACGGGGAGTTGGATGAAGCGTTAGATGTTT 595
||| ||||| ||||||||||| || ||||||||||||| |||| | ||||
Sbjct 378 TATTGATACGTTTGGTAAGTATGGAGAGTTGGATGAAGAGTTACA-GTTT 426
Score = 257 bits (139), Expect = 2e-67
Identities = 180/200 (90%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 55 ATGTCTCTCGTCGCCGAAATCGATTCTCTCGGTTCCCATCCCGATCCTCTTTCCTACGTT 114
||||||||| ||||||||||| ||||||| ||||| | ||| ||||||||||||||||||
Sbjct 1 ATGTCTCTCCTCGCCGAAATCCATTCTCTAGGTTCACGTCCTGATCCTCTTTCCTACGTT 60
Query 115 AGTTTGATTGAAACACTCGCTAGTCTGGGAAGGACACTTGAAGCTGATGCTTTGTTTCAA 174
||||| |||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 61 AGTTTTATTGAAACACTCGCTAGTCTCAGAAGGACTCTCGAAGCTGATGCTTTGTTTCAT 120
Query 175 GAAGTAGTTCGATTC-CGAATCAATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGCT 233
||||||||| ||||| | || ||||||||||||||||||||||||||||||||||| |
Sbjct 121 GAAGTAGTTAGATTCATG-ATTTATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGGT 179
Query 234 TAGTGGATATTTGAGAAAAG 253
|||| |||||||||||||||
Sbjct 180 TAGTCGATATTTGAGAAAAG 199
> AT3G42560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:14680265-14680760 FORWARD LENGTH=297
Length=297
Score = 128 bits (69), Expect = 1e-28
Identities = 130/156 (83%), Gaps = 17/156 (11%)
Strand=Plus/Plus
Query 1144 GGATTCACCCCCGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGAGCAAAG 1203
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 151 GGATACACCCCTGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGACCAAAG 210
Query 1204 AAGTATGAAAAGGTTCCAGAAATATTCAGGGAAATGGAAGCCTCTGGGTGTACTGCAGAT 1263
||||||||||||| ||||| || || | | | ||||||||| | ||||
Sbjct 211 AAGTATGAAAAGG-----GAAAT-----GG-AA--G----CTTTTGGGTGTACGGTAGAT 253
Query 1264 CGGAAAGCAAGACAACTATTGCAAAATGCTTTTATG 1299
| |||||||||||| |||||||||||||||||||||
Sbjct 254 CAGAAAGCAAGACAGCTATTGCAAAATGCTTTTATG 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5