BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg330235 Length=1347 Score E Sequences producing significant alignments: (Bits) Value AT5G36300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 584 7e-166 AT3G42560.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 128 1e-28 > AT5G36300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:14320668-14322426 FORWARD LENGTH=883 Length=883 Score = 584 bits (316), Expect = 7e-166 Identities = 393/429 (92%), Gaps = 9/429 (2%) Strand=Plus/Plus Query 879 ACAGTTTGGAAGTTTCCAAGATGTCGAGGAACTTGTGGGTAAGCTCAAGTCACAGGGTGT 938 ||||||||| |||||| | ||| | | |||||||||||||||||| ||||| || ||||| Sbjct 420 ACAGTTTGGGAGTTTCGAGGATATTGGGGAACTTGTGGGTAAGCTAAAGTCTCAAGGTGT 479 Query 939 CGCTCCTTCAGCCAATCTGTTTTGTACTTTGGCAAATGCATATGCTCAGCAGGGACTGTA 998 |||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| | Sbjct 480 TGCTCCTTCTGCTAATTTATTTTGCACTTTGGCAAATGCATATGCTCAGCAGGGACTATG 539 Query 999 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAACGAGGGGATTGAACCAAACTTGAT 1058 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 CAAACAGACAGTAAAGGTGCTCAAGATGATGGAGAATGAGGGGATTGAACCAAACTTGAT 599 Query 1059 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 1118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TATGCTGAATGTTTTGATTAATGCTTTTGGAACTGCTGGGAAGCACATGGAAGCTCTATC 659 Query 1119 TATTTATCACCATATTAAAGAAAGCG---G-ATTCACCCCCGATGTGGTTACCTATAGTA 1174 ||||||||| ||||||||||||| || | ||||||||| ||||||||||||||||||| Sbjct 660 TATTTATCATCATATTAAAGAAACCGTATGGATTCACCCC-GATGTGGTTACCTATAGTA 718 Query 1175 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAAAGGT-T---CCAGAAATATTC 1230 ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| Sbjct 719 CACTTATGAAAGCATTCACTCGAGCAAAGAAGTATGAAATGGTATGTTCCAGAAATATTC 778 Query 1231 AGGGAAATGGAAGCCTCTGGGTGTACTGCAGATCGGAAAGCAAGACAACTATTGCAAAAT 1290 |||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| Sbjct 779 AGGGAAATGGAAGCTTCTGGGTGTACAACAGATCGGAAAGCAAAACAATTATTGCAAAAT 838 Query 1291 GCTTTTATG 1299 ||| ||||| Sbjct 839 GCTATTATG 847 Score = 335 bits (181), Expect = 7e-91 Identities = 214/230 (93%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 366 AGAGGAATCGTGGCGTGTGGTTAATGAGATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 425 ||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 198 AGAGGTATCGTGGCGTGTGGTTAACGAAATGAAGAAGAGGAAGTTTCGTTTGAATTCGTT 257 Query 426 TGTTTATGGGAAGATTATTCGTATTTATAGAGACAATGGGATGTGGAAGAAAGCTTTAGG 485 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 258 TGTTTATGGGAAGATTATTCGTATTTATAGAGATAATGGTATGTGGAAGAAAGCTTTAGG 317 Query 486 GATTGTAGACGAGATTAGGGAGATTGGTTTGCCAATGGATGTGGAGATATACAATAGCAT 545 ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 318 GATTGTAGAAGAGATTAGGGAGATTGGTTTGCCTATGGATGTGGAGATATACAATAGTGT 377 Query 546 TATCGATACATTTGGTAAGTACGGGGAGTTGGATGAAGCGTTAGATGTTT 595 ||| ||||| ||||||||||| || ||||||||||||| |||| | |||| Sbjct 378 TATTGATACGTTTGGTAAGTATGGAGAGTTGGATGAAGAGTTACA-GTTT 426 Score = 257 bits (139), Expect = 2e-67 Identities = 180/200 (90%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 55 ATGTCTCTCGTCGCCGAAATCGATTCTCTCGGTTCCCATCCCGATCCTCTTTCCTACGTT 114 ||||||||| ||||||||||| ||||||| ||||| | ||| |||||||||||||||||| Sbjct 1 ATGTCTCTCCTCGCCGAAATCCATTCTCTAGGTTCACGTCCTGATCCTCTTTCCTACGTT 60 Query 115 AGTTTGATTGAAACACTCGCTAGTCTGGGAAGGACACTTGAAGCTGATGCTTTGTTTCAA 174 ||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||| Sbjct 61 AGTTTTATTGAAACACTCGCTAGTCTCAGAAGGACTCTCGAAGCTGATGCTTTGTTTCAT 120 Query 175 GAAGTAGTTCGATTC-CGAATCAATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGCT 233 ||||||||| ||||| | || ||||||||||||||||||||||||||||||||||| | Sbjct 121 GAAGTAGTTAGATTCATG-ATTTATGGAAGCTATTCGGTGAGATTGTACAATGCTTTGGT 179 Query 234 TAGTGGATATTTGAGAAAAG 253 |||| ||||||||||||||| Sbjct 180 TAGTCGATATTTGAGAAAAG 199 > AT3G42560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:14680265-14680760 FORWARD LENGTH=297 Length=297 Score = 128 bits (69), Expect = 1e-28 Identities = 130/156 (83%), Gaps = 17/156 (11%) Strand=Plus/Plus Query 1144 GGATTCACCCCCGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGAGCAAAG 1203 |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 151 GGATACACCCCTGATGTGGTTACCTATAGTACACTTATGAAAGCATTCACTCGACCAAAG 210 Query 1204 AAGTATGAAAAGGTTCCAGAAATATTCAGGGAAATGGAAGCCTCTGGGTGTACTGCAGAT 1263 ||||||||||||| ||||| || || | | | ||||||||| | |||| Sbjct 211 AAGTATGAAAAGG-----GAAAT-----GG-AA--G----CTTTTGGGTGTACGGTAGAT 253 Query 1264 CGGAAAGCAAGACAACTATTGCAAAATGCTTTTATG 1299 | |||||||||||| ||||||||||||||||||||| Sbjct 254 CAGAAAGCAAGACAGCTATTGCAAAATGCTTTTATG 289 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66314919945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5