BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330249
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 248 2e-65
AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 243 7e-64
> AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G36925.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14564392-14564971
REVERSE LENGTH=249
Length=249
Score = 248 bits (134), Expect = 2e-65
Identities = 191/217 (88%), Gaps = 9/217 (4%)
Strand=Plus/Plus
Query 24 TCTTCTGCTTTGTCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGA 83
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | |||
Sbjct 39 TCTTCTGCTTTGCCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGA 98
Query 84 TATGGGTCC-GCAAATAAGA-ACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCAAA 141
||||||||| || ||| | | ||||||||||||||||||||||||||| | ||| |||||
Sbjct 99 TATGGGTCCAGC-AAT-ATATACTCCACCATCAGGATCATGTGGAGCTCCTATTTCCAAA 156
Query 142 TACGATTCATCACAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAA 201
|| |||| || ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 157 TATGATT--TC-CAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACTCGAA 213
Query 202 AAC-CAAGAAGATGTGACTCACACTACACTTCCTTGA 237
||| || ||||||||||| || ||||||| ||||||
Sbjct 214 AACACA-GAAGATGTGACCCATACTACACGACCTTGA 249
> AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G36920.1);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:14565813-14566244
REVERSE LENGTH=347
Length=347
Score = 243 bits (131), Expect = 7e-64
Identities = 180/202 (89%), Gaps = 10/202 (5%)
Strand=Plus/Plus
Query 38 TGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGATATGGGTCCGCAAA 97
||||||||||||||||| ||||||||||||||| |||| |||| ||||||| | |
Sbjct 4 TGATGTTTGTGATTGGTTTTGTAGAAGCTAGAAGATCA------GATACGGGTCCGGATA 57
Query 98 TAAGAACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCA-AATACGATTCATCACAA 156
|||| ||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 58 TAAGTACTCCACCATCAGGATCATGTGGAGCTTCAATTGC-AGAATTCAATTCATCACAA 116
Query 157 GTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAAAAC-CAAGAAGATGT 215
|||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 117 ATACTAGCCAAGAGAGCACCACCATGTAGACGTCCTCGACTCCAAAACTCA-GAAGATGT 175
Query 216 GACTCACACTACACTTCCTTGA 237
||| ||||||||||||||||||
Sbjct 176 GACCCACACTACACTTCCTTGA 197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5