BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg330249 Length=237 Score E Sequences producing significant alignments: (Bits) Value AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 248 2e-65 AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 243 7e-64 > AT5G36920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36925.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14564392-14564971 REVERSE LENGTH=249 Length=249 Score = 248 bits (134), Expect = 2e-65 Identities = 191/217 (88%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 24 TCTTCTGCTTTGTCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGA 83 |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct 39 TCTTCTGCTTTGCCTGATGTTTGTGATTGGTCTTGTAGAAGCTAGTATACCAGATGACGA 98 Query 84 TATGGGTCC-GCAAATAAGA-ACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCAAA 141 ||||||||| || ||| | | ||||||||||||||||||||||||||| | ||| ||||| Sbjct 99 TATGGGTCCAGC-AAT-ATATACTCCACCATCAGGATCATGTGGAGCTCCTATTTCCAAA 156 Query 142 TACGATTCATCACAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAA 201 || |||| || ||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 157 TATGATT--TC-CAAGTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACTCGAA 213 Query 202 AAC-CAAGAAGATGTGACTCACACTACACTTCCTTGA 237 ||| || ||||||||||| || ||||||| |||||| Sbjct 214 AACACA-GAAGATGTGACCCATACTACACGACCTTGA 249 > AT5G36925.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36920.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:14565813-14566244 REVERSE LENGTH=347 Length=347 Score = 243 bits (131), Expect = 7e-64 Identities = 180/202 (89%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 38 TGATGTTTGTGATTGGTCTTGTAGAAGCTAGAATATCAGGGGGCGATATGGGTCCGCAAA 97 ||||||||||||||||| ||||||||||||||| |||| |||| ||||||| | | Sbjct 4 TGATGTTTGTGATTGGTTTTGTAGAAGCTAGAAGATCA------GATACGGGTCCGGATA 57 Query 98 TAAGAACTCCACCATCAGGATCATGTGGAGCTTCAATTGCCA-AATACGATTCATCACAA 156 |||| ||||||||||||||||||||||||||||||||||| | ||| | ||||||||||| Sbjct 58 TAAGTACTCCACCATCAGGATCATGTGGAGCTTCAATTGC-AGAATTCAATTCATCACAA 116 Query 157 GTACTAGCCAAGAGACCACCACCATGTAGACGTCCTCGACCCCAAAAC-CAAGAAGATGT 215 |||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||| Sbjct 117 ATACTAGCCAAGAGAGCACCACCATGTAGACGTCCTCGACTCCAAAACTCA-GAAGATGT 175 Query 216 GACTCACACTACACTTCCTTGA 237 ||| |||||||||||||||||| Sbjct 176 GACCCACACTACACTTCCTTGA 197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10707030537 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5