BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330253
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36970.1 | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:1460436... 1192 0.0
AT1G65690.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 398 5e-110
> AT5G36970.1 | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194
REVERSE LENGTH=747
Length=747
Score = 1192 bits (645), Expect = 0.0
Identities = 714/748 (95%), Gaps = 2/748 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGATCATCAGAAAATCCATCCGGTAAGCGACCCGGAAGCGCCACCACATCCAACG 60
||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||
Sbjct 1 ATGTCCGATCACCAGAAAATTCATCCGGTGAGCGACCCCGAAGCGCCGCCACATCCAACG 60
Query 61 GCTCCCCTTGTTCCACGTGGCTCCTCGAGATCGGAACACGGTGATCCCACCAAGACACAG 120
|||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||
Sbjct 61 GCTCCCCTTGTTCCACGTGGTTCCTCAAGATCGGAACATGGTGATCCTACCAAGACACAG 120
Query 121 CAAGCAGCACCGTTGGATCCTCCGAGAAAGAAGAAAGGATCAAGAAGTTGTTGGTGCAGA 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CAAGCAGCACCGTTGGATCCTCCGAGGGAGAAGAAAGGATCAAGAAGTTGTTGGTGCAGA 180
Query 181 TGCGTGTGCTACACACTTCTTGTCCTCTTTCTCCTTATTGTTATCGTTGGAGCGATCGTT 240
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 TGCGTGTGCTACACGCTTCTTGTCCTCTTTCTCCTTATTGTCATCGTAGGAGCGATCGTT 240
Query 241 GGTATACTCTACCTTGTCTTTAGACCAAAATTACCGGATTACAATATTGACCGGTTACAG 300
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GGTATACTCTACCTTGTATTTAGACCAAAATTTCCGGATTACAATATTGACCGGTTACAG 300
Query 301 CTCACCCGGTTTCAACTAAACCAAGACTTGAGTTTATCTACCGCGTTTAACGTTACCATA 360
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 CTAACCCGGTTTCAACTAAACCAAGACTTGAGTTTATCCACCGCATTTAACGTTACCATA 360
Query 361 ACCGCGAAAAATCCCAACGAGAAAATCGGAATTTACTATGAAGATGGAAGC-AGAATTAG 419
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 361 ACCGCGAAAAATCCCAACGAGAAAATTGGAATTTACTATGAAGATGGAAGCAAG-ATTAG 419
Query 420 TGTCTTGTACATGCAAACCAGACTCAGTAATGGGTCATTGCCGAAATTCTACCAAGGACA 479
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 420 TGTCTTGTACATGCAAACCAGAATCAGTAATGGGTCGTTGCCAAAATTCTACCAAGGACA 479
Query 480 TGAGAATACGACTATTATATCCGTAGAAATGACTGGTTTTAATCAGAATGCAACAAGTAT 539
||||||||| |||||||||| ||||||||||||||||||| ||| |||||||||||| |
Sbjct 480 TGAGAATACTACTATTATATTGGTAGAAATGACTGGTTTTACTCAAAATGCAACAAGTTT 539
Query 540 AATGACGACATTGCAAGAGCAACAACGGTTAACAGGAAGCATACCGTTGCGGATTAGAGT 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AATGACGACATTGCAAGAGCAACAACGGTTAACAGGAAGTATACCGTTGCGGATTAGAGT 599
Query 600 TACCCAACCGGTTCGGATCAAACTCGGGAAATTAAAGTTGATGGAAGTAAGATTTTTGGT 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 TACCCAACCGGTTCGGATCAAACTCGGGAAATTAAAGTTGATGAAAGTAAGATTTTTGGT 659
Query 660 TAGGTGTGGTGTATCCGTTGATAGCTTAGCTGCTAACAGTGTGATTAGGGTTAGAAGTAG 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TAGGTGTGGTGTATCCGTTGATAGCTTGGCTGCTAACAGTGTGATTAGGGTTAGAAGTAG 719
Query 720 TAACTGCAAATACAGGTTTAGACTATAA 747
||||||||||||||||||||||||||||
Sbjct 720 TAACTGCAAATACAGGTTTAGACTATAA 747
> AT1G65690.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:24431430-24432953
REVERSE LENGTH=1026
Length=1026
Score = 398 bits (215), Expect = 5e-110
Identities = 465/583 (80%), Gaps = 28/583 (5%)
Strand=Plus/Plus
Query 162 AAGAAGTTGTTGGTGCAGATGCGTGTGCTACACACTTCTTGTC-CTC-TTT-CTCCTTAT 218
|||||||||||| ||||||||| | |||||||| ||| || | || ||| || ||| |
Sbjct 229 AAGAAGTTGTTGTTGCAGATGCTTTTGCTACAC-GTTC-TG-CTTTCTTTTGCTTCTTGT 285
Query 219 TGTTATC-GTTGGAGCGAT-CGTTGGTATACTCTACCTTGTCTTTAGACCAAAATTACCG 276
||| | || || || || | |||||||||| ||||||||||||| ||| || |||||
Sbjct 286 CGTT-GCAGTAGGCGC-ATCCATTGGTATACTATACCTTGTCTTTAAACCGAAGCTACCG 343
Query 277 GATTACAATATTGACCGGTTACAGCTCACCCGGTTT-CAACTAAACCAAGACTTGAGTTT 335
|||||| |||||||||||||||||||||||||||| || || |||||||||| ||||||
Sbjct 344 GATTACTCTATTGACCGGTTACAGCTCACCCGGTTTGCA-CTGAACCAAGACTCGAGTTT 402
Query 336 -ATCTACCGCGTTTAACGTTACCATAACCGCGAAAAATCCCAACGAGAAAATCGGAATTT 394
| |||| || |||||||| || |||||||| || ||||| |||||||| || |||||||
Sbjct 403 GA-CTACGGCTTTTAACGTGACTATAACCGCTAAGAATCCGAACGAGAAGATTGGAATTT 461
Query 395 ACTATGAAGATGGAAGCA-GAATTAGTGTCTTGTACATGCAA-ACCAGACTCAGTAATGG 452
| ||||||||||| |||| || ||| || | ||||||| || | || ||| || |||||
Sbjct 462 ATTATGAAGATGGGAGCAAGA-TTACCGTGTGGTACATGGAACATCA-ACTAAGCAATGG 519
Query 453 GTCATTGCCGAAATTCTACCAAGGACATGAGAATACGACTATT-ATATCCGTAGAAATGA 511
||| ||||| ||||| |||||||||||||| |||||||| | | |||| |||||||||||
Sbjct 520 GTCGTTGCCAAAATTTTACCAAGGACATGAAAATACGAC-AGTGATATACGTAGAAATGA 578
Query 512 CTGGTTTTA-ATCAGAATGCAACAAGTATAATGACGACATT-GCAAGAGCAACAACGGTT 569
||||| | | || |||||| | || ||| ||||||||| | ||||||||||||
Sbjct 579 CTGGTCAAACA-CAAAATGCATCGGGTTTAAGGACGACATTAG-AAGAGCAACAACAAAG 636
Query 570 AACAGG-AAGCATACCGTTGCGGATTAGAGTTACCCAACCGGTTCGGATCAAACTCGGGA 628
||| || || ||||| ||| | |||||||| | ||||||||||||| ||||| | ||||
Sbjct 637 AACCGGGAAT-ATACCATTGAGAATTAGAGTAAACCAACCGGTTCGGGTCAAATTTGGGA 695
Query 629 AATTAAAGTTGATGGAAGTAAGATTTTTGGTTAGGTGTGGTGTATCCGTTGATAGCTTAG 688
| || ||| | | ||||||||||| ||||| || |||||||||| ||||||||||| |
Sbjct 696 AGTTGAAGCTCTTCGAAGTAAGATTCTTGGTCAGATGTGGTGTATTTGTTGATAGCTTGG 755
Query 689 CTGCTAACAGTGTGATTAGGGTT-AGAAGTAGTAACTGCAAAT 730
|| | || | ||| |||| | || | |||||||| |||||||
Sbjct 756 CTACCAATAATGTTATTAAGATTCA-AAGTAGTAGTTGCAAAT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5