BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330259
Length=3060
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1 | ... 1941 0.0
AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 | chr5... 1869 0.0
> AT4G00930.1 | Symbols: CIP4.1 | COP1-interacting protein 4.1
| chr4:396558-400734 FORWARD LENGTH=3402
Length=3402
Score = 1941 bits (1051), Expect = 0.0
Identities = 1251/1345 (93%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 1697 AGATGGGTGACAAATTTGTTGACAAAGTGGGAAGTGGAGAGGCCACACTTATGGGTGCAG 1756
|||||||||||| ||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 1907 AGATGGGTGACATATTGGTTGACAAGGTGGGAAGTGGAGAGGCGACTCTTATCGGTGCAG 1966
Query 1757 ATAAAATACAAGCTGCGAGTAATCTACAAGTTGCTGGTATGGTGAGCACCCCACATGCCT 1816
| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct 1967 ACAAAATACAAGCTGCGAGTGATCTACATGTTGCTGGTATGGCGAGCACCCCACATGCCT 2026
Query 1817 TTGTCCAGGAATCCAAAACGCTGGATCACATTGGTAAATTTACGGATGAAAACGCATCCC 1876
||||||||||||||||||||||||| ||||| |||||| |||||||| |
Sbjct 2027 TTGTCCAGGAATCCAAAACGCTGGACCACATAGGTAAAGTTACGGAT--------A---- 2074
Query 1877 GTGAACATGAAGTTTCTAAGGAAAAAGTTGAAATAGATGCTGATCAGGCTAAATCTGTGA 1936
|||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2075 GTGAACATGAAGTTCCTAAGGAAAGAGTTGCGATAGATGCTGATCAGGCTAAATCTGTGA 2134
Query 1937 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCCGG 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2135 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCTGG 2194
Query 1997 TAGATTCTGGTGCACAGAATGTCGAACCTATCAAAGTTGTAGATGGAGAAGGGCATGATA 2056
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2195 TAGATTCTGGTGCACAGAATGTTGAACCTATCAAAGTTGTAGATGGAGAAGGACATGATA 2254
Query 2057 GTGTTATCAGAAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGG 2116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2255 ATGTTATCAGAAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGG 2314
Query 2117 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2315 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 2374
Query 2177 AGGAGGCCAAAGTAGTAGATTCTTTGCAGcaaaagaaagaagctgaggaaaatctggaaa 2236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2375 AGGAGGCCCAAGTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAA 2434
Query 2237 aaagtgagaagaagtcaagcaagagatcaaagaagaaagaCTCTTTGAACATTGTGGAGG 2296
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435 AAAGTGGGAAGAAGTCAAGCAAGAGATCAAAGAAGAAAGACTCTTTGAACATTGTGGAGG 2494
Query 2297 AGGCCCAAGTATTGTCAGTTGAGGTAAACAATATTGCTCAGGAGGAGGCTTCTCCCATCA 2356
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 2495 AGGCCCAAGTATTGTCAGTTGAGGTAAACAATGTTGCTCAGGAGGAAGCTTCTCCCATCA 2554
Query 2357 ACAACCCAAAAGACACCGATGCATCATTCACTCCAGCTAAGAAAAATACTGAGAGCAATG 2416
|||||||||||||||| ||||||| |||||| |||||||| |||||||| ||||||||||
Sbjct 2555 ACAACCCAAAAGACACAGATGCATTATTCACGCCAGCTAAAAAAAATACCGAGAGCAATG 2614
Query 2417 CTTCTCCTTTGAAAAAGATTACTGAGGTCACCGGTAATACTGAGGATAGTAACCGTTCCA 2476
|||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 2615 CTTCACCTTTGAAAAAGATTATTGAGGTCACCGATAATACTGAGGATATTAACCGTTCCA 2674
Query 2477 TGCAAGTTCTGAAAGAGAACACTGATATTGGG-GACAATTTTGGTTCTAGCCAAAAGGAC 2535
||||||||| |||||||||| ||| ||| ||| |||||| ||||||||||||||||||||
Sbjct 2675 TGCAAGTTCAGAAAGAGAACGCTGGTAT-GGGAGACAATATTGGTTCTAGCCAAAAGGAC 2733
Query 2536 GATATTGTTGGTGGTGCTAACAAGCAAGATCAAGTGACTGGTGGAACTAAATCTAAAAAG 2595
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2734 GATATTGTTGGTGGTGCTAACAAGCAAGACCAAGTGACTGGTGGAACTAAGTCTAAAAAG 2793
Query 2596 GAGAAGAGAAGCCTTGTTTTGCATCCTGGTGGTTCCATTGATCTTTCAATGAAACTGAAA 2655
||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2794 GAGAAGAAAAGCCTTGATTTGCATCCTGGTGGTTCCATTGATGGCTCAATGAAAATGAAA 2853
Query 2656 GAGACTAAAGGTAGA-TTCCAACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAAGGGA 2714
||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2854 GAGACAAAAGGTAGAGTTC-AACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAATGGC 2912
Query 2715 TAAGATTGATCGCAGTCGATCAAAGGTTGATCATTCTGATGCACCCATGAAAGGCGTAGT 2774
||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 2913 TAAGAATGATCGCAGTGGATCAAAGGTTGATCTTTCTGATGCACCCATGAAAGGCACAGT 2972
Query 2775 CATCAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAACCCGGTTACAGTGAACAAGAGTAA 2834
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2973 AAACAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAAGTCGGTTACAGTGAACAAGAGTAA 3032
Query 2835 GATGAATGTCAACAACAAGAAGGAAGCTGTGAAGAAAAACACTAACTCAGTCACAGCGAA 2894
||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||
Sbjct 3033 GATGAATGTCAACAACAAGGAGAAAGCTGTGAAGAAAATCTCTAACTCAGTCACAGCGAA 3092
Query 2895 CAAGAGTA-AGACGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTTCAA 2953
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 3093 CAAAAGTACA-ACGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTACGA 3151
Query 2954 ATGACTCCACTAAAACACCATCAGATAGTTCATCAGACGATGATAGTGATAGTGCTGTGA 3013
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 3152 GTGACTCCACTAAAGCACCATCAGATAGTTCATCAGACAATGATAGTGAT-GTG-----A 3205
Query 3014 CTTCTTCTATGCCTAGGAAGCAAGG 3038
|||||||||||| || |||||||||
Sbjct 3206 CTTCTTCTATGCATATGAAGCAAGG 3230
Score = 907 bits (491), Expect = 0.0
Identities = 583/627 (93%), Gaps = 8/627 (1%)
Strand=Plus/Plus
Query 1073 AATCTTTTCCAATCCCAGAAAGAGAAACTCTTGGAAATCCTCTTGTAGAAGCAACACAGA 1132
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1181 AATCTCTTCCAATCCCAGAAAGAGAAACTCTTCAAAATCCTCTTGTAGAAGCAATACAAA 1240
Query 1133 AAGAAACTGAGTTGGGTGTGAAATCTGCCGAAGATGTGGGAA-AAGATAATATGGAAACT 1191
||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||
Sbjct 1241 AAGAAACTGAGTTGGGTGTGAAAACTGTCGAAGATGTGGGAACAA-ATAATATGGAAACT 1299
Query 1192 GATACTCTAGTGAGCCACCCGGAAAATCATCTGGAGGCCAACAGTGAGTTGGCAACCAGT 1251
|||||||||||||||||||||||||||||| ||| |||||||||||||||| || | | |
Sbjct 1300 GATACTCTAGTGAGCCACCCGGAAAATCATTTGGTGGCCAACAGTGAGTTGACATCTACT 1359
Query 1252 CCAGTTACTGAGAAGAAGAAAAAGCGAAAGAAGATCTCAAAAGATCTCATCAATCAATCT 1311
|||||||||||||||||||||| || |||||||| ||||||||||| ||||||| ||||
Sbjct 1360 CCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGAGCTCAAAAGATCAAATCAATCTATCT 1419
Query 1312 GCTGCTGCCGCTACTGCTACTGCTACCACAGCTTCAAGAGAAATTGTGAACGAGATAAAC 1371
||| || || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GCTACT---GC--C-GCTACTGCTACCACAGCTTCAAGAGAAATTGTGAACGAGATAAAC 1473
Query 1372 GGAGTACCTGGAAATGTTGATCGTGTTGATGCTACTTCTGAATCTTGTCTAATTTCACAA 1431
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1474 GGAGCACCTGGAAATGTAGATCGTGTTGATGCTACTTCTGAATCTTGTCTAATATCACAA 1533
Query 1432 AGAGGAAATCTTGGCAAAGAAAATGAGATTGGTGAGAAGATTAATGAAGTTGTGGGAAGC 1491
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1534 AGAGAAAATCTTGGCAAAGAAAATGAGATTGGTGAGAAGATTAAGGAAGATGTGGGAAGC 1593
Query 1492 GGAAAAGCTATACCAAGTTCTGCAGATAATATCCAGACCGATAATTTGGTGAGCTACCCA 1551
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1594 GGAAAAGCTATACCAAGTTCTGCAGATAATATCCAGACCGATAAACGGGTGAGCTACCCA 1653
Query 1552 GAAAATCAGTTGGAGGTTAGCAGTGGTTTGACAACCAGTCCAGTTACTGAGAAGAAGAAA 1611
|| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||||||||
Sbjct 1654 GATAATCAGTTGGAGGTTAGCAGTGGTTTGACAACCGGGCCAACTACAGAGAAGAAGAAA 1713
Query 1612 AGGCAAAAGAAGTCCTCAAAGAATGACATCAATAAATCTACTGCTGCTACTACAACAGCA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1714 AGGCAAAAGAAGTCCTCAAAGAATGACATCAATAAATCTACTGCTGCTACTACAACATCA 1773
Query 1672 AAGATAATTGTGAATGAGAGGGAGAAG 1698
|||||||||||||||||||||||||||
Sbjct 1774 AAGATAATTGTGAATGAGAGGGAGAAG 1800
Score = 641 bits (347), Expect = 0.0
Identities = 428/467 (92%), Gaps = 6/467 (1%)
Strand=Plus/Plus
Query 614 TTAATACGGGGGAGAATCAGCAAACTTCTGATGCGGACAGGCTATTGGAAGAGAAAATTC 673
||| || ||| ||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 629 TTAGTATGGGAGAGAATCGGCAAACTTCTGTTGCGGACAGGCTATTGGAAGAGAAAAATC 688
Query 674 TCACAGTTAATTCAGAGCTTGAAGATGGGCATACCAGGGGTGAGGTGAAGGATGTACCAG 733
||||||||||||||||||||| ||||||||| ||||| |||| ||||||||| |||| ||
Sbjct 689 TCACAGTTAATTCAGAGCTTGTAGATGGGCAAACCAGTGGTGTGGTGAAGGAAGTACTAG 748
Query 734 ACAAACCAACTGTTAAAGAAGCTCTAGAAAAGCTAGATGATCTTACTGGAGCAATAGAAC 793
|||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 749 ACAATCAAACTGTTAAAGGAGCTCTAGAAAAGCTAGATGATCTTACGGGAGCAATAGAAC 808
Query 794 AAGATCTTGAAAAGGGAGGAAA-AAATGCTGATATAGTCATGATTGACCAAGAGAAGGAT 852
|||||||||||| |||| |||| | |||||||||||||||||||||||||||||||| |
Sbjct 809 AAGATCTTGAAACGGGA-GAAATCACTGCTGATATAGTCATGATTGACCAAGAGAAGGGT 867
Query 853 CTTCCACCT-TCTTCAGAACTTGTAGATGGGCAGATTACATCACAAAATGATGAAAGAGG 911
| ||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 868 AGTACACCTGT-TTCAGAACTTGTAGATGGGCAGATTACATCACAAGATGATGAGAGAGG 926
Query 912 TGAGGGACGCAA-ATTGGCTCCAAGTGTTGTCGATAATCTTCAAACTGCTGAATTGGTGA 970
||||||| | || |||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 927 TGAGGGAAG-AAGATTGGCTCCAAGTGCTCTCGATAATCTTCAAACTGCTGAAGTGGTGA 985
Query 971 CCAACGCGGATAACCAGTTGGAAGCTAGCAGTGGTTTGACAACTGGTCCAGCTACagaga 1030
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 986 CTAACGCGGATAACCAGTTGGAAGCTAGCAGTGGTATGACAACTGGTCCAGCTACAGAGA 1045
Query 1031 agaagagaaagagaacgaagagCTCAAAAGATCACATCAAACAATCT 1077
||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1046 AGAAGAGAAAGCGAACGAAGGGCTCAAAAGATCACATCAAACAATCT 1092
Score = 536 bits (290), Expect = 4e-151
Identities = 451/523 (86%), Gaps = 33/523 (6%)
Strand=Plus/Plus
Query 1 ATGGCTAATCGCGaaaaaaaTTCCTCACCGGAGATTCACTGCGTCTATGTAGAAACCAAC 60
|||||||||||||||| | |||||||||||||||||| |||||||| |||||||||||||
Sbjct 1 ATGGCTAATCGCGAAACAGATTCCTCACCGGAGATTCGCTGCGTCTTTGTAGAAACCAAC 60
Query 61 CTCGACACTCGCCTCGCGTTACCCGTACACAAAGATGAAATCGTCTCCGATTTCAAAGAC 120
||||||||||| ||||||||||| || || |||||||||||| |||||||||||||||||
Sbjct 61 CTCGACACTCGTCTCGCGTTACCTGTGCATAAAGATGAAATCATCTCCGATTTCAAAGAC 120
Query 121 AAAGTACTCAAGGAGCATAAAAAAGTTTTCCCAGAAATCGGAGAAATTAATATCTCTGCG 180
||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 121 AAAGTACTCAAGGAGCATAAACAAGTTTTCCCAGAAATTGGAGAAATCAATATCTCTGCG 180
Query 181 TTGAAGGTTAAACGACGAAG-GAAATTTTATCATTTCTCGGAATCTTTGAATGTGTGTAA 239
||||||||||| ||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 181 ATGAAGGTTAAAAGACGAAGAGAG-TTTTATCATTTCTCAGAATCTTTGAATGTGTGTAA 239
Query 240 GGCTTTTGATGGGATTAGTAGAAACTGGTTTATGTATGTTGATGCCGTTAGAGTTGACAA 299
|||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 240 GGCTTTTGATGGCATTAGTACAGACTGGTTTATGTATATTGATGCCGTTAGAGTTGACAA 299
Query 300 GGGTGAGATGTTGACTATAATGGCTACTGATCAAAATCGTTCGAATCTTGAGTTGGTTGA 359
|||| ||| |||| ||||||||| | ||||||||| | | | | |||||||||||
Sbjct 300 GGGTAAGACGTTGGCTATAATGGATGTTGATCAAAA-C---C---T-T-GAGTTGGTTGA 350
Query 360 GAGGAAGAAGGAGATTGGTATTGGTTCAGTAAATG-TAGATGGTATGCATACTAAGGATT 418
|| | |||||| | | | | ||| ||||| || | | | ||||||||||||
Sbjct 351 GA--A-GAAGGA-A--G--A--GATTCC--AAATGGTA-A-G--A---ATACTAAGGATT 391
Query 419 TGACTATTGAAGAAGGTTTGGGAACTGAAGTAGTTGAGAAGAAGACGAGGAAGAGGAGGA 478
||||||||| ||||||||||| |||| || | |||||||| ||||||||||||||||| |
Sbjct 392 TGACTATTGGAGAAGGTTTGGAAACTCAACTTGTTGAGAAAAAGACGAGGAAGAGGAGAA 451
Query 479 TTTTAAGTTC-GGATGGGAAAACAAGTCGGAAGAAAACCAAGG 520
|| ||||||| || ||||||||||||||| |||||| | ||||
Sbjct 452 TTGTAAGTTCCGG-TGGGAAAACAAGTCGAAAGAAATCTAAGG 493
Score = 172 bits (93), Expect = 1e-41
Identities = 114/124 (92%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 2185 AAA-GTAGTAGATTCTTTGCAGcaaaagaaagaagctgaggaaaatctggaaaaaagtga 2243
||| ||| |||||||||||||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct 2265 AAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGGAGAAAAGTGG 2324
Query 2244 gaagaagtcaagcaagagatcaaagaagaaagaCTCTTTGAACATTGTGGAGGAGGCCCA 2303
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2325 GAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCCA 2384
Query 2304 AGTA 2307
||||
Sbjct 2385 AGTA 2388
Score = 172 bits (93), Expect = 1e-41
Identities = 111/120 (93%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 2071 GTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGGAGAAAAGTGGGAAG 2130
||| |||||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||
Sbjct 2386 GTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAAAAAGTGGGAAG 2445
Query 2131 AAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCAAAGTA 2190
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2446 AAGTCAAGCAAGAGATCAAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCCAAGTA 2505
Score = 152 bits (82), Expect = 2e-35
Identities = 366/494 (74%), Gaps = 55/494 (11%)
Strand=Plus/Plus
Query 1223 TGGAGGCCAACAGTGAGT-TGGCAACCAGTCCAGTTACTGAGAAGAAGAAAAAGCGAAAG 1281
|||| || | ||||| || || |||| |||||| ||| |||||||||| |||||||| |
Sbjct 1004 TGGAAGCTAGCAGTG-GTATGACAACTGGTCCAGCTACAGAGAAGAAGAGAAAGCGAACG 1062
Query 1282 AAGATCTCAAAAGATCTCATCAATCAATCTGCTGCTGCCGCTACTGCTACTGCTACCACA 1341
||| ||||||||||| |||||| |||||| ||||| | |||||| ||| || |
Sbjct 1063 AAGGGCTCAAAAGATCACATCAAACAATCTACTGCT---G---CTGCTA---CTA-CA-A 1111
Query 1342 GCTTCAAGAGAAATTGTGAACGAGATAAACGGAGTACCTGGAAATGTTGATCGTGTTGAT 1401
||||||| |||||||||| |||||||| | | |||||||||||| ||| ||| ||||
Sbjct 1112 -ATTCAAGAAAAATTGTGAATGAGATAAATGAATTACCTGGAAATGGAGATTGTGGTGAT 1170
Query 1402 GCTACTTCTGAATCT-TGTCTAATTTCACAAAGAGGAAA-TCTTGGCAAAGAAAATGAGA 1459
||||||||| ||||| | || ||| || ||||| |||| |||| | |||||
Sbjct 1171 GCTACTTCTAAATCTCT-TCCAATCCCAGAAAGA-GAAACTCTT--C----AAAATCCTC 1222
Query 1460 TTGGTGAGAAG--AT---TAATG-AAGT-TG-TGGGAAGCGGAAAAGCTATACCAAG-T- 1509
|| || ||||| || || | || | | |||| | ||||| || | | ||| |
Sbjct 1223 TT-GT-AGAAGCAATACAAAAAGAAACTGAGTTGGG-TG-TGAAAA-CTGT-CGAAGATG 1276
Query 1510 TCTG--CAGATAATATCCAGACCGATAATTTGGTGAGCTACCCAGAAAATCAGTTGGAGG 1567
| | || ||||||| | || |||| | | |||||| |||| |||||||| |||| ||
Sbjct 1277 TGGGAACAAATAATATGGAAACTGATACTCTAGTGAGCCACCCGGAAAATCATTTGGTGG 1336
Query 1568 TTAGCAGTG-GTTTGACAACCAGTCCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGTCC 1626
| ||||| | |||||| | | |||||||||||||||||||||||||||||||||| |
Sbjct 1337 CCAACAGTGAG-TTGACATCTACTCCAGTTACTGAGAAGAAGAAAAGGCAAAAGAAGAGC 1395
Query 1627 TCAAA-GAATGACATCAATAAATCT---ACTGCTGCTACTAC-A--ACAGCA--AAGATA 1677
||||| || | | |||||| |||| ||||| |||||| | | ||||| |||| |
Sbjct 1396 TCAAAAGA-TCAAATCAATCTATCTGCTACTGCCGCTACTGCTACCACAGCTTCAAGAGA 1454
Query 1678 A-TTGTGAATGAGA 1690
| ||||||| ||||
Sbjct 1455 AATTGTGAACGAGA 1468
Score = 84.2 bits (45), Expect = 7e-15
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2845 AACAACAAGAAGGAAGCTGTGAAGAAAAACACTAACTCAGTCACAGCGAACAAGAGTAAG 2904
|||||||||||||||||||||||||||| | |||| || || |||| |||||||||||||
Sbjct 2974 AACAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAAGTCGGTTACAGTGAACAAGAGTAAG 3033
Query 2905 ACGAAT 2910
| ||||
Sbjct 3034 ATGAAT 3039
> AT5G37190.1 | Symbols: CIP4 | COP1-interacting protein 4 | chr5:14723144-14726694
REVERSE LENGTH=2849
Length=2849
Score = 1869 bits (1012), Expect = 0.0
Identities = 1238/1345 (92%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 1697 AGATGGGTGACAAATTTGTTGACAAAGTGGGAAGTGGAGAGGCCACACTTATGGGTGCAG 1756
|||||| ||||| ||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1136 AGATGGCTGACATATTGGTTGACAAGGTGGGAAGTGGAGAGGCCACACTTATCGGTGCAG 1195
Query 1757 ATAAAATACAAGCTGCGAGTAATCTACAAGTTGCTGGTATGGTGAGCACCCCACATGCCT 1816
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 ACGAAATACAAGCTGCGAGTAATCTACAAGTTGCTGGTATGGCGAGCACCCCACATGCCT 1255
Query 1817 TTGTCCAGGAATCCAAAACGCTGGATCACATTGGTAAATTTACGGATGAAAACGCATCCC 1876
||||||||||||| ||||||||||| ||||| |||||| |||||||| | |
Sbjct 1256 TTGTCCAGGAATCGAAAACGCTGGACCACATAGGTAAAGTTACGGAT--------A---C 1304
Query 1877 GTGAACATGAAGTTTCTAAGGAAAAAGTTGAAATAGATGCTGATCAGGCTAAATCTGTGA 1936
||||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1305 -TGAACATAAAGTTCCTCAGGAAAGAGTTGAAATAGATGCTGATCAGGCTAAATCTGTGA 1363
Query 1937 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCCGG 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1364 AGTCTACTAAGAAGAAAAGTTCAAGAAAAGCCAAGACCCCAGCTAAAGAAGATACTCTGG 1423
Query 1997 TAGATTCTGGTGCACAGAATGTCGAACCTATCAAAGTTGTAGATGGAGAAGGGCATGATA 2056
|||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1424 TAGATTTTGGTGCACAGAATGTTGAACCTATCAAAGTTGTAGATGGAGAAGGACATGTTA 1483
Query 2057 GTGTTATCAGAAATGTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGG 2116
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1484 ATGATATCAGAAATGTATTAGATTCTTTGCAGCAAAGGACCGAAGTTGAGGAGAATATGG 1543
Query 2117 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 AGAAAAGTGGGAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGG 1603
Query 2177 AGGAGGCCAAAGTAGTAGATTCTTTGCAGcaaaagaaagaagctgaggaaaatctggaaa 2236
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 AGGAGGCCCAAGTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAA 1663
Query 2237 aaagtgagaagaagtcaagcaagagatcaaagaagaaagaCTCTTTGAACATTGTGGAGG 2296
|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1664 AAAGTGGGAAGAAGTCAAGCAAGAAAACAAAGAAGAAAGACTCTTTGAACATTGTGGAGG 1723
Query 2297 AGGCCCAAGTATTGTCAGTTGAGGTAAACAATATTGCTCAGGAGGAGGCTTCTCCCATCA 2356
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1724 AAGCCCAAGTTTTGTCAGTTGAGGTAAACAATGTTGCTCAGGAGGAGGCTTCTCCCATCA 1783
Query 2357 ACAACCCAAAAGACACCGATGCATCATTCACTCCAGCTAAGAAAAATACTGAGAGCAATG 2416
|||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1784 ACAACCCAAAAGACACAGATGCATCATTCACGCCAGCTAAGAAAACTACTGAGAGCAATG 1843
Query 2417 CTTCTCCTTTGAAAAAGATTACTGAGGTCACCGGTAATACTGAGGATAGTAACCGTTCCA 2476
|||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 1844 CTTCGCCTTTGAAAAAGATTAGTGAGGTCACCGATAATACTGAGGATCTTAACCGTTCCA 1903
Query 2477 TGCAAGTTCTGAAAGAGAACACTGATATTGGG-GACAATTTTGGTTCTAGCCAAAAGGAC 2535
||||||| |||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1904 TGCAAGTACTGAAAGAGAACGCTGATAT-GGGAGACAATTTTGGTTCTAGCCAAAAGGAC 1962
Query 2536 GATATTGTTGGTGGTGCTAACAAGCAAGATCAAGTGACTGGTGGAACTAAATCTAAAAAG 2595
||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||
Sbjct 1963 GATATTGTTGGTGGTACTAACAAGGAAGACCAAGTGACTGGTGGAGCTAAATCTAAAAAG 2022
Query 2596 GAGAAGAGAAGCCTTGTTTTGCATCCTGGTGGTTCCATTGATCTTTCAATGAAACTGAAA 2655
||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2023 GAGAAGAAAAGCCTTGATTTGCATCCTGGTGGTTCCATTGATGGCTCAATGAAAGTGAAA 2082
Query 2656 GAGACTAAAGGTAGA-TTCCAACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAAGGGA 2714
||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2083 GAGACAAAAGGTAGAGTTC-AACCATCTAGTTCAGGTACTAGTCAATTGCAGTCAAGGGC 2141
Query 2715 TAAGATTGATCGCAGTCGATCAAAGGTTGATCATTCTGATGCACCCATGAAAGGCGTAGT 2774
||||| |||||||| | ||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 2142 TAAGAATGATCGCAATGGATCAAAGGTTGATCTTTCTGATGCATCCATGAAAGGCACAGT 2201
Query 2775 CATCAACAAGAAGGAAGCTGTGAAGAAAAGCTCTAACCCGGTTACAGTGAACAAGAGTAA 2834
| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct 2202 AAACAACAAGAAGGAAGCCGTGAAGAAAAGCTCTAATTCGGTTACAGTGAACAATAGTAA 2261
Query 2835 GATGAATGTCAACAACAAGAAGGAAGCTGTGAAGAAAAACACTAACTCAGTCACAGCGAA 2894
| |||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||
Sbjct 2262 GGTGAATGTCAACAACAAGAAGGAAGTTGTGAAGAAAATCTCTAACTCAGTCACGGCGAA 2321
Query 2895 CAAGAGTAAGA-CGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTTCAA 2953
||||| | | | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2322 CAAGA-TCACAACGAATTTCTTCAAGGATGCTGAGGAGGATGAATCTAAGACGACTTCGA 2380
Query 2954 ATGACTCCACTAAAACACCATCAGATAGTTCATCAGACGATGATAGTGATAGTGCTGTGA 3013
||||||| |||| ||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 2381 GTGACTCCTCTAATGCACCATCAGATAGTTCATCAGACAATGATAGTGAT-GTG-----A 2434
Query 3014 CTTCTTCTATGCCTAGGAAGCAAGG 3038
||||||||||| || |||||||||
Sbjct 2435 CTTCTTCTATGTATATGAAGCAAGG 2459
Score = 654 bits (354), Expect = 0.0
Identities = 506/577 (88%), Gaps = 19/577 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAATCGCGaaaaaaaTTCCTCACCGGAGATTC-ACTGCGTCTATGTAGAAACCAA 59
|||||||||||||||| |||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 1 ATGGCTAATCGCGAAACAAATTCCTCACCGGAGATTCGA-TGCGTCTTTGTAGAAACCAA 59
Query 60 CCTCGACACTCGCCTCGCGTTACCCGTACACAAAGATGAAATCGTCTCCGATTTCAAAGA 119
|||||||||||| ||| |||| || || |||||||||||| ||||||||||||||||
Sbjct 60 CCTCGACACTCGTCTCATTTTACATGTGCATAAAGATGAAATCATCTCCGATTTCAAAGA 119
Query 120 CAAAGTACTCAAGGAGCATAAAAAAGTTTTCCCAGAAATCGGAGAAATT-AATATCTCTG 178
|| | ||||||||||||||||| |||||||||||||||| ||||||||| || |||||||
Sbjct 120 CAGATTACTCAAGGAGCATAAACAAGTTTTCCCAGAAATTGGAGAAATTCAA-ATCTCTG 178
Query 179 CGTTGAAGGTTAAACGACGAAGGAAA-TTTTATCATTTCTCGGAATCTTTGAATGTGTGT 237
| |||||||||||| |||||| |||| |||||||||||||| || |||||| ||||||||
Sbjct 179 CCTTGAAGGTTAAAAGACGAA-GAAAGTTTTATCATTTCTCAGATTCTTTGCATGTGTGT 237
Query 238 AAGGCTTTTGATGGGATTAGTAGAAACTGGTTTATGTATGTTGATGCCGTTAGAGTTGAC 297
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 238 AAGGCTTTTGATGGCATTAGTAGAAACTGGTTTATGTATATTGATGCCATTAGAGTTGAC 297
Query 298 AAGGGTGAGATGT-TGACTATAATGGCTACTGATCAAAATCGTTCGAATCTTGAGTTGGT 356
|||||| |||||| || ||||||||||| |||||||||| | |||||||||||
Sbjct 298 AAGGGTAAGATGTATG-CTATAATGGCTGCTGATCAAAA-----C----CTTGAGTTGGT 347
Query 357 TGAGAGGAA-GAAGGAGATTGGTATTGGTTCAGTAAATGTAGATGGTATGCATACTAAGG 415
||||| ||| ||| ||||||| | ||||| |||| |||||||| |||| ||| |||||
Sbjct 348 TGAGAAGAAGGAA-GAGATTGCAAATGGTTTAGTACTTGTAGATGATATGAATAATAAGG 406
Query 416 ATTTGACTATTGAAGAAGGTTTGGGAACTGAAGTAGTTGAGAAGAAGACGAGGAAGAGGA 475
||||||||| || ||||||||||| ||| |||||||||||| ||||||| ||||||||||
Sbjct 407 ATTTGACTAGTGGAGAAGGTTTGGAAACCGAAGTAGTTGAGGAGAAGACAAGGAAGAGGA 466
Query 476 GGATTTTAAGTTCGGATGGGAAAACAAGTCGGAAGAAAACCAAGGTTGATCTCAATCAAT 535
| ||| ||||| ||| |||||| ||||||| |||||| | ||||||||||||| || ||
Sbjct 467 GAATTATAAGTCCGGGTGGGAATACAAGTCCAAAGAAATCTAAGGTTGATCTCAGTCCAT 526
Query 536 CTGCTGTTGCTGCTACTACCGAGTTATGTGGAAAAGT 572
|||||||||||||||||||||||||||||||||||||
Sbjct 527 CTGCTGTTGCTGCTACTACCGAGTTATGTGGAAAAGT 563
Score = 641 bits (347), Expect = 0.0
Identities = 432/473 (91%), Gaps = 6/473 (1%)
Strand=Plus/Plus
Query 605 AAAGCGGTGTTAATACGGGGGAGAATCAGCAAACTTCTGATGCGGACAGGCTATTGGAAG 664
||||||| ||| || ||| ||||| ||||||||||||| | |||| |||||| ||||||
Sbjct 656 AAAGCGGCCTTAGTATGGGAGAGAAGCAGCAAACTTCTGTTACGGAAAGGCTACTGGAAG 715
Query 665 AGAAAATTCTCACAGTTAATTCAGAGCTTGAAGATGGGCATACCAGG-GGTGAGGTGAAG 723
|||||| |||||| |||||||||||||||| ||||||||||||| || |||| |||||||
Sbjct 716 AGAAAAATCTCACTGTTAATTCAGAGCTTGTAGATGGGCATACC-GGTGGTGTGGTGAAG 774
Query 724 GATGTACCAGACAAACCAACTGTTAAAGAAGCTCTAG-AAAAGCTAGATGATCTTACTGG 782
|| ||||||||||| | |||| ||||||||||||||| ||||| ||||||||||||| ||
Sbjct 775 GAAGTACCAGACAATCAAACTATTAAAGAAGCTCTAGAAAAAG-TAGATGATCTTACGGG 833
Query 783 AGCAATAGAACAAGATCTTGAAAAGGGAGGAAAAAATGCTGATATAGTCATGATTGACCA 842
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 834 AACAATAGAACAAGATCTTGAAAAGGGAGGAAAAACTGCTGATATAGTCATGATTGACCA 893
Query 843 AGAGAAGGATCTTCCACCTTCTTCAGAACTTGTAGATGGGCAGATTACATCACAAAATGA 902
||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |||
Sbjct 894 AGAGAAGGATCTTCCACCTGCTTCAAAACTTGTAGATGGGCAGATTACGTCACAAGTTGA 953
Query 903 TGAAAGAGGTGAGGGACGCAA-ATTGGCTCCAAGTGTTGTCGATAATCTTCAAACTGCTG 961
||| |||||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 954 TGAGAGAGGTGAGGGAAG-AAGATTGGCTCCAAGTGCTGTCGATAATCTTCAAACTGCTG 1012
Query 962 AATTGGTGACCAACGCGGATAACCAGTTGGAAGCTAGCAGTGGTTTGACAACTGGTCCAG 1021
|| ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1013 AAGTGGTGACTAACGTGGATAACCAGTTGGAAGCTAGCAGTAGTTTGACAACTGGTCCAG 1072
Query 1022 CTACagagaagaagagaaagagaacgaagagCTCAAAAGATCACATCAAACAA 1074
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1073 CTACAGAGAAGAAGAGAAAGCGAATGAAGAGCTCAAAAGATCACATCAAACAA 1125
Score = 161 bits (87), Expect = 3e-38
Identities = 112/124 (90%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 2185 AAA-GTAGTAGATTCTTTGCAGcaaaagaaagaagctgaggaaaatctggaaaaaagtga 2243
||| ||| |||||||||||||||||| || |||| |||||| ||| |||| |||||||
Sbjct 1494 AAATGTATTAGATTCTTTGCAGCAAAGGACCGAAGTTGAGGAGAATATGGAGAAAAGTGG 1553
Query 2244 gaagaagtcaagcaagagatcaaagaagaaagaCTCTTTGAACATTGTGGAGGAGGCCCA 2303
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GAAGAAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCCA 1613
Query 2304 AGTA 2307
||||
Sbjct 1614 AGTA 1617
Score = 154 bits (83), Expect = 5e-36
Identities = 107/119 (90%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 2071 GTATTAGATTCTTTGCAGCAAAGGAACGAAGCTGAGGAGAATATGGAGAAAAGTGGGAAG 2130
||| |||||||||||||||||| ||| ||||||||||| ||| |||| ||||||||||||
Sbjct 1615 GTAGTAGATTCTTTGCAGCAAAAGAAAGAAGCTGAGGAAAATCTGGAAAAAAGTGGGAAG 1674
Query 2131 AAATCAAGCAAGAGATCGAAGAAGAAAGACTCTTTGAACATTGTGGAGGAGGCCAAAGT 2189
|| |||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1675 AAGTCAAGCAAGAAAACAAAGAAGAAAGACTCTTTGAACATTGTGGAGGAAGCCCAAGT 1733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152156338119
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5