BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330282
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37474.1 | Symbols: | Putative membrane lipoprotein | chr5:... 344 2e-94
> AT5G37474.1 | Symbols: | Putative membrane lipoprotein | chr5:14875186-14875527
REVERSE LENGTH=243
Length=243
Score = 344 bits (186), Expect = 2e-94
Identities = 224/243 (92%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGGACAAAACTACCATCTTGTTTATCTGCTATTAATTATTTGTCTTCTTTTTTCT 60
|||||||||||||| ||||| ||||||| |||||||||||| || || |||||||| |||
Sbjct 1 ATGTCAGGACAAAAATACCAGCTTGTTTCTCTGCTATTAATAATCTGCCTTCTTTTCTCT 60
Query 61 CAATCAACAGCAAGCGGCTGTGAGTTCAAAGGCTTTTGTAGAACTGATGACCAGTGCAAA 120
|||||||| ||||| |||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 61 CAATCAACTGCAAGTGGCTGTAATTTCAAAGGCTCTTGTAGAACTGATGACCAGTGCAAA 120
Query 121 CGCATATGCAGAGGCCATGGGATAGATACAAGGTTTCTATTGTGTGTTCCTTATTCTTCA 180
||||||||||||||||||||| ||||| |||| |||| | ||||||||||||||||||||
Sbjct 121 CGCATATGCAGAGGCCATGGGCTAGATCCAAGCTTTCAACTGTGTGTTCCTTATTCTTCA 180
Query 181 AAGGGAGGCAAATGTTGTTGTTTACATTATGAAGGGGCTCCATCATCAAGCGAAGAAATA 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 181 AAGGGAGGCAAATGTTGTTGTTTACATTATGAAGGGGCTCCATTATCAAGCGAAGTAATA 240
Query 241 TAG 243
|||
Sbjct 241 TAG 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5