BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330283

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37478.1 | Symbols:  | TPX2 (targeting protein for Xklp2) pr...   477    2e-134


> AT5G37478.1 | Symbols:  | TPX2 (targeting protein for Xklp2) 
protein family | chr5:14881560-14883989 FORWARD LENGTH=727
Length=727

 Score =  477 bits (258),  Expect = 2e-134
 Identities = 281/292 (96%), Gaps = 2/292 (1%)
 Strand=Plus/Plus

Query  1    ATGTTCAACTATTCGGTTGCAACTAATTATTATAT-CATGAAACTTCAGAAAAAACAAGA  59
            |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct  247  ATGTTCAACTATTCGGTTGCAACTAATTATTACATCCA-GAAACTTCAGAAAAAACAAGA  305

Query  60   AGAAAGGTTGCAAAAGATGATAGAAGAGGAAGAGATTCGTATGTTGAGGAAGGAAATGGT  119
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  306  AGAGAGGTTGCAAAAGATGATAGAAGAGGAAGAGATTCGCATGTTGAGGAAGGAAATGGT  365

Query  120  TCCAAAAGCTCAATTGATGCCTTTCTTCGACCGACCTTTCCTCCCACAGAGATCGAGCAG  179
            ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct  366  TCCAAAAGCTCAATTGATGCCTTTCTTCGACAGACCTTTTCTCCCACAAAGATCGAGCAG  425

Query  180  ACCATTGACGATGCCAAAGGAACCAAGCTTTGGAAACGTACACAGCACTTGTTGGACTTG  239
            |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct  426  ACCATTGACGATGCCAAAAGAACCAAGCTTTGGAAACGTAAACAGCACTTGTTGGACTTG  485

Query  240  TGTTTTCAACAACCAACACTACCTTTACCATATTAACCATGCTCATGCTTAA  291
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  486  TGTTTTCAACAACCAACACTATCTTTACCATATTAACCATGCTCATGCTTAA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5