BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330287
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37520.1 | Symbols: | Protein of Unknown Function (DUF239) ... 739 0.0
AT2G24950.1 | Symbols: | Protein of Unknown Function (DUF239) ... 619 2e-176
> AT5G37520.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:14902670-14904211 FORWARD LENGTH=600
Length=600
Score = 739 bits (400), Expect = 0.0
Identities = 466/498 (94%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 709 GCAGGTAAAAATGAGTGTTATAACAGCATGTGTCCAGCTGGGATCATTTTGGTCCGTTCA 768
|||||| ||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 103 GCAGGTCAAAATCAGTGTTATAACAGCTTGTGTCCGGCTGGAATCATTTTGGTCCGTTCA 162
Query 769 GATATTCCTCTTGGTGTGCTTCGAGGTCCTCCTGGTGTTCGTGGCTCTAAACAAGTA-TC 827
|||||||||||||||| ||||||||||||||||||||| ||||| |||| |||| || |
Sbjct 163 GATATTCCTCTTGGTGGGCTTCGAGGTCCTCCTGGTGTCCGTGGTTCTACACAAATAGT- 221
Query 828 ATATGATACATATGGATTACTAAAGGATAAAGCAAATGGTAATTGGTGGCTCGAGTTTGG 887
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 222 ATATGATACATATGGATTACTCAAGGACAAAGCAAATGGTAATTGGTGGCTCGAGTTTGG 281
Query 888 AGGAATACAAATTGGGTTTTGGCCAGCAAATATATTTCAACAGAGTTTGGGTAACAGTAT 947
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 282 AGGAATACAAATTGGGTTTTGGCCAGCAAACATATTTCAACAGAGTTTGGCTAACAGTGT 341
Query 948 CGAGTGGGGAGGAGAAGTATATAGTGCATCTCTGCCGGGTCCTCGTATGGGAAATGGTTA 1007
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 CGAGTGGGGAGGAGAAGTATATAGCGCATCTCTGCCGGGTCCTCGTATGGGAAATGGTTA 401
Query 1008 TTTTCCATTGTTAGATCCA-TATTACGATGCACATGTATGTAATATAACTACAGTTGATG 1066
||||||||||||||||||| | ||||||||||||| |||||||||||| ||||||||
Sbjct 402 TTTTCCATTGTTAGATCCAGTGG-ACGATGCACATGTGTGTAATATAACTTTAGTTGATG 460
Query 1067 AGAATTTTAATATTGATAGGATGGTAAAAAATATAGAGACATTCTCGGATAACAATCGTA 1126
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 461 AGAATTTTAAGGTTGATAAGATGGTAAAAAATATAGAGACATTCTCGGATAACAATCATA 520
Query 1127 GTTATAAAGTAAACGAGGATTTAGATTCAGGATTACCGGTCGGACATATCATATATTTTG 1186
||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 521 GTTATAAAGTATACGAGGATTTAGATTCAGGACTACCGGTTGGACATATCATATATTTTG 580
Query 1187 GAGGTCCTGGAAAGATGT 1204
||||||||||||||||||
Sbjct 581 GAGGTCCTGGAAAGATGT 598
Score = 152 bits (82), Expect = 7e-36
Identities = 96/103 (93%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 553 ATGGTTATTTCTGTACATGATCCTGAAGTTAGATATCCGCAGTTTAGTTCTGCTCGTATG 612
|||| ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct 1 ATGGCTATTTCTGTACATGATCCTGAAGTTAGATCTCCGCAATTTAGTTCTTCTCGTATG 60
Query 613 CACTTTCAGATTGGAGATGATTTTATTCAAGTTGGATGGACTG 655
||| ||||||||||||| ||||||||||||| |||||||||||
Sbjct 61 CACGTTCAGATTGGAGACGATTTTATTCAAGCTGGATGGACTG 103
> AT2G24950.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:10613105-10615563 FORWARD LENGTH=1236
Length=1236
Score = 619 bits (335), Expect = 2e-176
Identities = 885/1143 (77%), Gaps = 67/1143 (6%)
Strand=Plus/Plus
Query 80 ATCATTTTGTGGATGCAGACACATTGCAAAATTTCACT-TTCTTTGAAATGGAAAAACAA 138
||| |||||||||||| || | ||| |||| ||||| | | |||||||| ||| | |||
Sbjct 119 ATCGTTTTGTGGATGCTGAAATATTACAAACTTTCAGTGAT-TTTGAAATTGAAGAGCAA 177
Query 139 CTTAAAGTCGTCGACGAACATGCTGC-TAAATTCATCAAAACTACACATGGAGATACATA 197
|||||||||||| || ||| |||| | ||||| ||||| |||| |||||| ||| ||||
Sbjct 178 CTTAAAGTCGTCAACAAACCTGCTACGAAAATT-ATCAAGACTATACATGGCGATTCATA 236
Query 198 TGAATGTGTGGATTTTTACAAACAACCAGCGTTTGACCATCTCA-CGATGAAAAATCACT 256
||| || || ||||||||||||||||| ||||||||||||| || |||||||||||| |
Sbjct 237 TGATTGCGTAGATTTTTACAAACAACCCGCGTTTGACCATC-CATTGATGAAAAATCATT 295
Query 257 TACTCCACTACAAAATGCACCATCTATCATCCCTTTA-TAA-TTCAAGAACAAGAAAGAT 314
|| | || |||||||||| | | ||||| || ||| || ||||| || ||| |
Sbjct 296 TATTTCATTACAAAATGCGTCGGCCATCAT-CC-TTACGAACCTCAAG----AGCAAG-T 348
Query 315 AAATGATAAAAATTTTGGTTTCTTGTGGGAAAATGGTGTAGGGTGTCCCATGGGTACCAT 374
| ||| ||| ||||||| ||||||| ||||||| |||||||||| || |||||| |
Sbjct 349 --A--ATAGAAAGTTTGGTTACTTGTGGAAAAATGGCATAGGGTGTCCAATTGGTACCGT 404
Query 375 ACCCATACAAAGAGTCACCAAAGACAAACTCTTGAGATTAAATTCGTAT-TCCAACAAAT 433
||| ||| ||| | | | |||||| ||||||||| |||||||| || | || || | |
Sbjct 405 ACCTATAAAAAAAATTGCTAAAGACGAACTCTTGAAATTAAATTTGT-TCTCTAA-TAGT 462
Query 434 T-TAAGCCAC-ATGGTTCTTGGAACTTCACTTATAATCAATATATTGTCCATGGTGACCA 491
| ||| || | | |||||||||||||| |||||||||||||||| ||| || | | ||
Sbjct 463 TATAACCCTCGA-GGTTCTTGGAACTTTACTTATAATCAATATAATGTTGATAATAATCA 521
Query 492 ACATCATTATGCGGTTG-CTCGAACCAAGAGAGGAGAA-A-AGAAAAGCTATACTGGAGC 548
|||||||| ||| | || | || ||||||| | || || | ||||| || | ||||||
Sbjct 522 ACATCATTTTGCAG-TGTCCCGTACCAAGA-A-GATAATAGGGAAAATTTACAATGGAGC 578
Query 549 ATCAATGGTTA-TTTCTGTACATGATCCTGAAGTTAGATATCCGCAGTTTAGTTCTGCTC 607
| |||| | || ||||| || |||||||| |||||| | | || | |||||||||||
Sbjct 579 AACAAT-GATACTTTCTATAAATGATCCTAAAGTTAAACCTTTACAATATAGTTCTGCTC 637
Query 608 GTATGCACTTTCAGATTGGAGATGATTTTATTCAAGTTGGATGGACTGTAG-ATC-CGAG 665
|||||||| |||| |||||||||||||||||||||| || |||||||| | ||| ||
Sbjct 638 GTATGCACGTTCAAATTGGAGATGATTTTATTCAAGCAGGTTGGACTGT-GAATCAAAAG 696
Query 666 TTTATATCCTGACATGCAA-ACACGAAGTTTTGTTTATACGAAAGCAGGTAAAAATGAGT 724
|||||| |||||| ||| || ||||||| ||| ||||||||| ||| |||| | |
Sbjct 697 -TTATATTCTGACA-ACAAGACTCGAAGTTATGTGTATACGAAAATTGGTGAAAACCAAT 754
Query 725 GTTATAACAGCATGTGTCCAGCTGGGATCATTTTGGTCCGTTCAGATATTCCTCTTGGTG 784
|||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 755 GTTATAACAGCATGTGTCCAGCTGGGATTATAATGGTCAGTTCAGATATTGCTCTTGGTT 814
Query 785 TGC-TTCGAGGTCCTCCTGGTGTTCGTGGCTCTA-AACAA-G-TATCATATGATACATAT 840
|| || |||||||||| |||||||||| || | ||||| | | || | ||| | | |
Sbjct 815 TGGATTT-AGGTCCTCCTTGTGTTCGTGGTTCAAGAACAATGGTCTCTTCTGA-AT-T-T 870
Query 841 GGATTACTAAAGGATAAAGCAAATGGTAATTGGTGGCTCGAGTTTGGAGGA-ATACAAAT 899
|| ||||| ||| |||| | ||||||| ||||||||||| |||| |||||| | | ||||
Sbjct 871 GGTTTACTCAAGAATAAGGAAAATGGTGATTGGTGGCTCAAGTTAGGAGGACA-AGAAAT 929
Query 900 TGGGTTTTGGCCAGCAAATATATTTCAACAGAGTTTGGGTAACAGTATCGAGTGGGGAGG 959
||||| |||||||||||| | |||| || ||| || || |||| |||||| ||||||||
Sbjct 930 TGGGTATTGGCCAGCAAAAAAATTTAAAGAGACTTCGGCCAACAATATCGAATGGGGAGG 989
Query 960 AGAAGTATATAGTGCATCTCTGCCGGGTCCTC-GTATG-GGAAATGGTTATTTTCCATTG 1017
||||||||||||||||| | | ||| |||| | | ||| |||| || | |||||||| |
Sbjct 990 AGAAGTATATAGTGCATTTTTACCGAGTCCACAG-ATGAGGAA-TGATCATTTTCCA--G 1045
Query 1018 TTA-G-ATCCATATTACGATGC-A-CATGTATGTAATATAACTACAGTTGATGAGAATTT 1073
| | || | | || ||||| | ||| | | ||||||||||| ||| || || |||||
Sbjct 1046 AAACGCATATAGAGTATGATGCCATCATTT-T-TAATATAACTATAGTCGACGAAAATTT 1103
Query 1074 TAATATTGAT-AGGATGG-TAAAAAATATAGAGACATTCTCGGATAACAATCGTAGTTAT 1131
|| | || | || || |||| ||| |||| |||| |||||||||| |||| |||||
Sbjct 1104 CAAGAGTGTTGAGC--GGATAAAGCATAGAGAGGCATTTTCGGATAACACTCGTGGTTAT 1161
Query 1132 AAAGTAAACGAGGATTTAGAT-TCAGGATTACCGGTCGGACATATCATATATTTTGGAGG 1190
|||||| | || ||| | || | || ||||||| | || || |||||||| ||||||
Sbjct 1162 AAAGTATATGATGATATCTATGT-AGAATTACCGATAAGAAATGCCATATATTATGGAGG 1220
Query 1191 TCC 1193
|||
Sbjct 1221 TCC 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5