BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330292
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1325 0.0
> AT5G37590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:14927313-14932787 REVERSE LENGTH=1824
Length=1824
Score = 1325 bits (717), Expect = 0.0
Identities = 784/817 (96%), Gaps = 2/817 (0%)
Strand=Plus/Plus
Query 1 ATGACATATATCAGGAGACTGAGATATCTTTCACAGATTTATATACGATCCAATCATCTA 60
||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 919 ATGGCATATATCAGGAGACTGAGATATCTTTCTCAGATATATATACGATCCAATCGTCTG 978
Query 61 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCAAAGGGATGG 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 GCCGAGGCTGAAAAACTTCAAAGGAAATTATTGCACATGATGGAATTATCGAAGGGATGG 1038
Query 121 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTAGCACTCACTTTACGATTATCTGGG 180
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1039 AACTCAATGGAGGCAATAACTGCAGCTGAAGCATTGGCTCTCACTTTACGATTATCTGGG 1098
Query 181 CAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCaaaaaaaaTTACTT 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1099 AAGCTGGGAGAAGCTCTAGAACTTTTTGAAAAGTGTCTCAATGCCCGAAAAAAATTACTT 1158
Query 241 CCAGAAGGACATATCCAGATAGGTGGAAACTTTCTGCACATCGCAAAGACATTTATGCTC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1159 CCAGAAGGACATATCCAGATAGGTGGAAACTTGCTGCACATCGCAAAGACATTTATGCTT 1218
Query 301 CAGGCTAGTCAGATGAGAAGAACTGATAAGAGTGAAGCTCTATCCAAACTAGAAAAAGCA 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1219 CAGGCTAGTCAGATGAGAAGAACTGATAACAGTGAAGCTCTATCCAAACTAGAAAAAGCA 1278
Query 361 AAGAATTATCTTGAAAACTCAGCTAGGATAGCGAAA-GACGTTCTGCTTAAGCTTAAAAA 419
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1279 AAGAATTATCTTGAAAACTCAGCTAGGATAGC-AAAGGACGTTCTGCATAAGCTTAAAAA 1337
Query 420 CCAAAAGATCAAAGCGCAGAAACACGAAAAGTCCAGTGTAACTCTTAGGAATTATGAACA 479
|||||||| ||||||||||||| ||||||| ||||||| | |||||||||||||||||||
Sbjct 1338 CCAAAAGAGCAAAGCGCAGAAAGACGAAAAATCCAGTGCAGCTCTTAGGAATTATGAACA 1397
Query 480 TGCGGCGTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 539
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 CGCGGCTTTAGTCATACTGCTGCAATCTCTTGAGAGTCTTGCAGCTTTGGAGATGAGCAA 1457
Query 540 AAATGAGATCCAGGAGCCAAAGGAAGAAAATCTGCATGTAGCTGAAGATTCACTTCTCCA 599
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1458 AAATGAGATCCATGAGCCAAAGGAAGAAAATCTGCATGCAGCTGAAGATTCACTTCTCCA 1517
Query 600 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTTTGAAGT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1518 ATGTGTTACAGCTTACAAAGAGTTTGGTTATGGAACTCAGCTGCAAGATTCTTCTGAAGT 1577
Query 660 AAAGTCTGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 719
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AAAGTCAGAATACCTTTCGTGTCTTAAGCATCTCTCAGCTTTATTAGCAAAGAAAGAGAC 1637
Query 720 GACGCTTAACTCAAAGGCAAGTCATATTTCCTTACCAGAGCTCAAGGAAGAAATTAGGCG 779
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 1638 GACGCTTAACTCAAAGGCAAGTCCTATTTCTTTACCAGAGCTCAAGGAAGAAATTAAGCG 1697
Query 780 TACTGAAATCGATCTTCGTTCACAAAAGACTGGCTAA 816
|| ||| ||||||||||||||||||||||| ||||||
Sbjct 1698 TATTGACATCGATCTTCGTTCACAAAAGACAGGCTAA 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5