BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330293
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1027 0.0
> AT5G37590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:14927313-14932787 REVERSE LENGTH=1824
Length=1824
Score = 1027 bits (556), Expect = 0.0
Identities = 645/686 (94%), Gaps = 13/686 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCGAATTTTGTCGACTCTTCT-CAAAGGAACTCATCGGACTTCACGTTC 59
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 79 ATGTCTCTGCTTCGAATTTTGTCGACTCTT-TACAAAGGAACTCATCGGACTTCACGTTC 137
Query 60 CTTTTCTTCTTCCCGGAATCCGATCTGCACCACTTTCGCTAATTCACTCTCCGGGAAGCC 119
||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 138 CTTCTCTTCTTCGCGGAATCTGATCTGCACCACTTTCGCTAATCCACTCTCCGGGAAACC 197
Query 120 -ACGGATTTCGTATCAGAATGATTATGGAGGACATAGAACGAATTTGAATCTCTTGGAAC 178
| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 198 GA-GGATTTCGTATCAGAATGATTATGGAGGCCATAGAACAAATTTGCATCTCTTGGATT 256
Query 179 CGCGGCTTTGGATTATCTTTTCTGGTCAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 238
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 257 CTCGGCTTTGGATTATCTTATCTGGACAAGCTGCAATCCTTGGGTTTTGTGGGAACACTG 316
Query 239 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGA---G-- 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 317 TATTGGCAGAGGATGAGTCTATGAAGTCGAAATCTGGAGATAATATGGATGAGAGTGGCA 376
Query 294 ----TGGGCTAGAAAAAATTGAGGACGGTTCGGTTGTATCGAATATACATACATCTAAGT 349
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 377 ATACTGGGCTAGAAAAAATTGAGGACGGGTCGGTTGTATCTAATATACACACATCTAAGT 436
Query 350 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTGGAGCCAGCTG 409
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 437 GGAGGGTGTTTACTGATAGTGGAAGAGATTATTTCTTTCAGGGGAAACTCGAGCCGGCTG 496
Query 410 AGAGGCTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 469
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGAGACTTTTCGGTTCGGCAATACAGGAAGCTAAGGAAGGTTTTGGAGAGAAGGATCCAC 556
Query 470 ATGTTGCATCTGCTTGCAACAATCTGGCAGAGTTATATAGAGTGAAGAAAGAATTCGACA 529
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 557 ATGTTGCATCTGCATGCAACAATCTGGCAGAGTTATATAGAGTCAAGAAAGAATTCGACA 616
Query 530 AAGCAGAGCCCTTATACTTGGAAGCTGTTAGTATCTTGGAGGATTTCTATGGTCCTGAAG 589
|||||||||| |||||| | ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 617 AAGCAGAGCCTTTATACCTAGAAGCTGTTAGTATCTTGGAGGAGTTCTACGGTCCTGACG 676
Query 590 ATGTGCGTGTCGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 649
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 ATGTGCGTGTTGGTGCTACTCTCCACAACCTTGGACAACTCTATCTTGTCCAGCGAAAAC 736
Query 650 TTGAGGAAGCTCGTGCGTGCTATGAG 675
||||||||||||||||||||||||||
Sbjct 737 TTGAGGAAGCTCGTGCGTGCTATGAG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5