BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330308

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37740.2 | Symbols:  | Calcium-dependent lipid-binding (CaLB...   617    2e-176


> AT5G37740.2 | Symbols:  | Calcium-dependent lipid-binding (CaLB 
domain) family protein | chr5:14992049-14993562 FORWARD LENGTH=767
Length=767

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 378/399 (95%), Gaps = 4/399 (1%)
 Strand=Plus/Plus

Query  111  GAAGCTGAAAACACGCGTGGTGAAACACAGTGTAAACCCCGAGTGGAACGACGACTTGAC  170
            |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  240  GAAGTTGAAAACACGCGTGGTGAAACATAGTGTAAACCCCGAGTGGAACGACGACTTGAC  299

Query  171  ACTTTCCGTGACTGATCCGAATCTCCCGATTAAACTCACGGTTTACGATTATGACTTGTT  230
            |||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |
Sbjct  300  ACTTTCCGTGACTGATCCGAATCTCCCGATTAAACTTACGGTTTATGACTATGACTTGCT  359

Query  231  CTCCGCGGATGACAAGATGGGAGAAGCCGAGTTTCACATTGCTCCATTTCTTGAAGCTAT  290
            ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||
Sbjct  360  CTCCGCGGATGACAAGATGGGAGAAGCCGAGTTCCACATTGGTCCATTTATTGAAGCTAT  419

Query  291  TAAATTTTGCC-ATCAGCTCGGACCAGGACTTCCTAGTGGGACCATAATAAGGAAGATAG  349
            ||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  420  TAAATTT-GCCCATCAGCTCGGACCAGGACTTCCTAATGGGACCATAATAAAGAAGATAG  478

Query  350  AGCCAAGCAGAAAAAATTGTTTGTCTGAAG-AGAGCCACATTGTGTTGAACCAAGGCAAG  408
            |||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||||
Sbjct  479  AGCCGAGCAGAAAAAATTGTTTGTCTGAATCA-AGCCACATTGTGTTGAACCAAGGCAAG  537

Query  409  ATTGTCCAGAATATGTTCCTTAGACTCCAACACGTGGAATGTGGAGAGGTTGAGCTACAG  468
            ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  538  ATTGTCCAGAATATGTTCCTTAGACTCCAGCACGTGGAGTGTGGAGAGGTTGAGCTACAG  597

Query  469  CTCGAGTGGATCGATGTCCCCGGTGCAAGGGGTATTTAG  507
            |||||||||||||||||||| ||| ||||||||||||||
Sbjct  598  CTCGAGTGGATCGATGTCCCGGGTTCAAGGGGTATTTAG  636



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5