BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330314
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37810.1 | Symbols: NIP4;1, NLM4 | NOD26-like intrinsic prot... 1336 0.0
AT5G37820.1 | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic prot... 970 0.0
> AT5G37810.1 | Symbols: NIP4;1, NLM4 | NOD26-like intrinsic protein
4;1 | chr5:15045232-15047807 FORWARD LENGTH=852
Length=852
Score = 1336 bits (723), Expect = 0.0
Identities = 810/853 (95%), Gaps = 2/853 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTTGCATAGTGATGAAATAGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCGCATAGTGATGAAATCGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAA 60
Query 61 GGCAAAGATTGCCATGGAGGAATCGAGACGGTCATATGTACTTCTCCCAGCATTGTCTGC 120
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCAAAGATTGCCAAGGAGGAATCGAGACGGTTATATGTACTTCTCCCAGCATTGTCTGC 120
Query 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTCATAGTATTCTCTGGATGT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTACCCAAAAGTTGATAGCAGAGATGATTGGGACCTATTTTATAGTATTCTCTGGATGT 180
Query 181 GGAGTGGTGGTAGTAAATGTGTTGTACGGAGGAACAATAACTTTTCC-GGGCATTTGTGT 239
|||||||||||||| ||||| |||||||||||||||||||| ||||| ||| || |||||
Sbjct 181 GGAGTGGTGGTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGG-ATCTGTGT 239
Query 240 GACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCATATATCCGGTGCACA 299
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 240 TACTTGGGGTCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACA 299
Query 300 TTTTACCCCTGCCGTTACCGTTACTTTCGCCATTTTCCGGCGGTTCCCTTGGTATCAGGT 359
||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct 300 TTTTAACCCTGCCGTTACCGTTACTTTCGCCATTTTCCGACGGTTTCCTTGGCATCAGGT 359
Query 360 ACCATTGTATATAGGTGCACAATTTGCAGGATCGTTACTAGCGAGTTTGACATTGAGACT 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 ACCATTGTATATAGGTGCACAATTTGCGGGATCGTTACTAGCGAGTTTGACATTGAGACT 419
Query 420 TATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACAACTCCAGCTGATTCGCCGGCACG 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 420 AATGTTTAAAGTGACACCCGAAGCTTTCTTTGGAACGACTCCAGCTGATTCGCCAGCACG 479
Query 480 AGCGCTCGTGGCAGAGATCATTATCTCATTCCTCCTAATGTTCGTTATCTCTGGTGTTGC 539
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 AGCGCTCGTCGCAGAAATCATTATCTCATTCCTCCTCATGTTCGTTATCTCTGGAGTTGC 539
Query 540 CACCGATAATCGAGCGGTCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTT 599
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 CACCGATAATCGTGCGGTTGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATGGT 599
Query 600 GAACGTCTTTGTAGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTAGG 659
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 AAACGTCTTTGTGGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCAAGAAGTCTAGG 659
Query 660 ACCAGCATTAGTGATGGGAGTATATACACACATATGGGTTTATATTCTTGGCCCCGTTTT 719
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| |
Sbjct 660 ACCAGCATTAGTGATGGGAGTATATAAACACATATGGGTTTACATTGTTGGTCCCGTCCT 719
Query 720 AGGAGTTATATCAGGAGGTTTTGTTTACAACCTTATCAGATTTACGGATAAGCCACTCCG 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGAGTTATATCCGGAGGTTTTGTTTACAACCTTATCAGATTTACGGATAAGCCACTCCG 779
Query 780 AGAACTCACTAAGAGCGCTTCTTTTCTCCGTGCCGTTTCTCCAAGCCACAAAGCTTCTAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 780 AGAACTCACTAAGAGCGCTTCTTTTCTCCGTGCCGTTTCTCCAAGCCACAAGGGTTCTAG 839
Query 840 TTCTAAGACCTAA 852
||||||||| |||
Sbjct 840 TTCTAAGACTTAA 852
> AT5G37820.1 | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein
4;2 | chr5:15050261-15051542 FORWARD LENGTH=852
Length=852
Score = 970 bits (525), Expect = 0.0
Identities = 717/809 (89%), Gaps = 16/809 (2%)
Strand=Plus/Plus
Query 10 CATAGTGATGAAATAGAAGAAGAACAAATATCAAGAATTGAGAAAGGCAAAGGCAAAGAT 69
||| |||| || || ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 10 CATGGTGAAGAGATCGAAGACGAACAAATATCAAGAATTGAGAAAGGCAATTGCAAAGAT 69
Query 70 TGCCATGGAGGAATCGAGACGGTCATATGTACTTCTCCCAGCATTGTCTGCCTTACCCAA 129
|||| |||||||| ||||||| |||||||| |||||| |||||||| |||||||| |||
Sbjct 70 AGCCAAGGAGGAATGGAGACGGCCATATGTAGTTCTCCTAGCATTGTTTGCCTTACACAA 129
Query 130 AAGTTGATAGCAGAGATGATTGGGACCTATTTCATAGTATTCTCTGGATGTGGAGTGGTG 189
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 130 AAGTTGATAGCAGAGATGATTGGAACCTATTTCATAATATTCTCTGGATGTGGAGTAGTG 189
Query 190 GTAGTAAATGTGTTGTACGGAGGAACAATAACTTTTCC-GGGCATTTGTGTGACTTGGGG 248
||||| ||||| |||||||||||||||||||| ||||| ||| || ||||||||||||||
Sbjct 190 GTAGTGAATGTCTTGTACGGAGGAACAATAACATTTCCAGGG-ATCTGTGTGACTTGGGG 248
Query 249 TCTCATTGTTATGGTCATGATTTACTCTACTGGTCATATATCCGGTGCACATTTTACCCC 308
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 249 TCTCATTGTTATGGTCATGATTTACTCTACTGGTCACATTTCCGGTGCACATTTTAACCC 308
Query 309 TGCCGTTACCGTTACTTTCGCCATTTTCCGGCGGTTCCCTTGGTATCAGGTACCATTGTA 368
|||||| || || || ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 309 TGCCGTCACTGTCACGTTCGCTGTTTTCCGGCGGTTTCCTTGGTATCAGGTACCATTGTA 368
Query 369 TATAGGTGCACAATTTGCAGGATCGTTACTAGCGAGTTTGACATTGAGACTTATGTTTAA 428
||||||||||||| || | ||||| |||||||||||||| ||||||||||| ||||| ||
Sbjct 369 TATAGGTGCACAACTTACGGGATCATTACTAGCGAGTTTAACATTGAGACTAATGTTCAA 428
Query 429 AGTGACACCCGAAGCTTTCTTTGGAACAACTCCAGCTGATTCGCC-GGCACGAGCGCTCG 487
||||||||| ||||||||||||||||||||||| ||||||| | || || ||| || |
Sbjct 429 TGTGACACCCAAAGCTTTCTTTGGAACAACTCCAACTGATTCATCAGG-ACAAGCACTAG 487
Query 488 TGGCAGAGATCATTATCTCATTCCTCCTAATGTTCGTTATCTCTGGTGTTGCCACCGATA 547
| |||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 488 TAGCAGAGATCATTATCTCATTCCTCCTCATGTTCGTTATCTCCGGCGTTGCCACTGATA 547
Query 548 ATCGAGCGG-TCGGAGAATTAGCTGGAATTGCGGTGGGGATGACTATAATTTTGAACGTC 606
||| ||| | ||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 548 GTCGTGCGACT-GGAGAATTAGCTGGAATCGCGGTGGGGATGACTATAATATTGAACGTC 606
Query 607 TTTGTAGCCGGACCAATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTAGGACCAGCA 666
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 TTTGTAGCCGGACCTATTTCGGGAGCATCAATGAATCCAGCGAGAAGTCTTGGACCAGCA 666
Query 667 TTAGTGATGGGA-GTATATACAC-ACATATGGGTTTATATTCTTGGCCCCGTTT-TAGGA 723
||||||||||| | ||||| | | || |||||||| ||| |||| ||| ||| | |||
Sbjct 667 ATAGTGATGGGAAG-ATATAAAGGA-ATTTGGGTTTACATTGTTGGTCCC-TTTGTCGGA 723
Query 724 GTTATAT-CAGGAGGTTTTGTTTACAACCTT-ATCAGATTTACGGATAAGCCACTCCGAG 781
|| | | | |||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 724 ATTTT-TGCCGGAGGTTTTGTTTACAAC-TTCATGAGATTTACGGATAAGCCACTACGAG 781
Query 782 AACTCACTAAGAGCGCTTCTTTTCTCCGT 810
||||||| || || |||||||| ||||||
Sbjct 782 AACTCACAAAAAGTGCTTCTTTCCTCCGT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5