BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330331

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42070.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   678    0.0  


> AT5G42070.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast; 
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth 
stages; Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr5:16818984-16820195 REVERSE LENGTH=705
Length=705

 Score =  678 bits (367),  Expect = 0.0
 Identities = 424/451 (94%), Gaps = 5/451 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGAATTCCATTTCATCAATATCTCTTCCTCGATGTTTCATCTTCAACAATGGTAGT  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  77   ATGGCGAATTCCATTTCATCAATATCTCTGCCTCGATGTTTCATCTTCAACAATGGTAGT  136

Query  61   CACAAATCAAGGCCATGGCCGAGCTCAAGCAGtctcattctcaacaactcatcaaatcat  120
            |||||||||||||||||||| |||||||||||| || |||||||||| |||||||| |||
Sbjct  137  CACAAATCAAGGCCATGGCCAAGCTCAAGCAGTTTCTTTCTCAACAAATCATCAAAGCAT  196

Query  121  catcatcattctctactctctctttcttcttcGCCAG-CTTCCGTCGTAGAAACTGGTGA  179
            |||| |||| | ||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct  197  CATCCTCATCCACTACTCTCTCTTTCTTCTTCGCC-GTCTTCCGTCGTAGAAACTGATAA  255

Query  180  TGACGACG---ACGACCTCACTTTCAGTGGTTGCAGAGGGTGTGGGAAAGAGGAGAAAGA  236
            ||||||||   ||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  256  TGACGACGACAACGACCTCACTTTCAGTGGTTGCAGAGCGTGTGGGAAAGAAGAGAAAGA  315

Query  237  GAGTGGGTGTAAGGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCTGGTTTCGG  296
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  316  GAGTGGGTGTAATGGTGACGGACGGATTCAAGGTGGCATTGCAACTGTCCCCGGTTTCGG  375

Query  297  TTGGTGGCCCATTAAGGCTTACAGACCTTGTCCCGCGTTCGTGGAGGCCGGAGGTAGATA  356
            ||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct  376  TTGGTGGCCAATTAAGGCTTACAGGCCTTGTCCCGCGTTTGTTGAGGCCGGAGGTAGATA  435

Query  357  CCGCCGCATAGGACAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC  416
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  CCGCCGCATAGGGCAGAGCATGGACGAGGTTGCATTTGGTCGTGGTGACTCTAAATCCTC  495

Query  417  CACTTCTATAGACACCGGTGATTCACTACTA  447
            ||||||| |||||||| ||||||||||||||
Sbjct  496  CACTTCTGTAGACACCAGTGATTCACTACTA  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5