BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330332
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42040.1 | Symbols: RPN12b | regulatory particle non-ATPase ... 798 0.0
> AT5G42040.1 | Symbols: RPN12b | regulatory particle non-ATPase
12B | chr5:16813835-16814749 REVERSE LENGTH=702
Length=702
Score = 798 bits (432), Expect = 0.0
Identities = 490/519 (94%), Gaps = 0/519 (0%)
Strand=Plus/Plus
Query 286 AGGAATCGCATTCCGTCATCTCCGCAAGAGAATCTAACCCTGGGGTTGAACCTACTGCGA 345
|||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||| ||
Sbjct 184 AGGAATCGTATTCCGCCATCTCCGCAAGAGAATCTAATCATGGGGTTGAACCTACTGAGA 243
Query 346 CTGCTTGTTCAGAACAGAATTGCTGAATTCCACACTGAGCTGGAATTACTTTCGTCTGCA 405
|||||||||||||||||||| |||||||||||||| || |||| ||||||||| ||||||
Sbjct 244 CTGCTTGTTCAGAACAGAATAGCTGAATTCCACACAGAACTGGGATTACTTTCATCTGCA 303
Query 406 ACCTTGGAGAATCCTTGCATCAAGCATGCGGTGGAGCTCGAGCAATCCTTCATGGAAGGT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 ACCTTGGAGAATCCTTGCATCAAGCATGCGGTGGAGCTCGAGCAATCCTTCATGGAAGGT 363
Query 466 GCTTATAACCGTGTGTTGAGTGCTAGACAAACCGCACCTGATGAGACTTACGTGTATTTC 525
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 364 GCTTATAACCGTGTGTTGAGTGCTAGACAAACCGCACCTGATGAGACTTACGTCTATTTC 423
Query 526 ATGGATCTCTTGGCAAAAACCATTAGAGACGAAATAGCTGGATGCAGCGAGAAAGCGTAC 585
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 424 ATGGATCTCTTGGCAAAAACCATTAGAGATGAAATAGCTGGATGCAGTGAGAAAGCATAC 483
Query 586 GATCATCTCTCAGTCAGTGAAGGTAGTAAGATGTTGCTCTTCTCTTCTGATCAAGAACTG 645
|||||||||||| ||||||||||| |||||||||| |||||||| ||||||||| |||||
Sbjct 484 GATCATCTCTCAATCAGTGAAGGTTGTAAGATGTTACTCTTCTCGTCTGATCAACAACTG 543
Query 646 TTAACATATGTAAATGAGGAGCACCCGGAGTGGGAAGTAAAAGACGGGTTAGTTGTGTTC 705
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 544 TTAACATATGTGAACGAGGAGCACCCGGAGTGGGAAGTTAAAGACGGGTTAGTTGTCTTC 603
Query 706 CAAAAAGCCAAAGAAACCGCACCGTGCAAGGAGATACCGTCACTTCAACTCATCAATCAG 765
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 CAAAAAACCAGAGAAACCGCACCGTGCAAGGAGATACCGTCACTTCAACTCATCAACCAG 663
Query 766 ACTCTCAGCTACGCCAGAGAGCTCGAGCGTATCGTGTAA 804
|||||||| ||| |||||||||||||||||||| |||||
Sbjct 664 ACTCTCAGTTACACCAGAGAGCTCGAGCGTATCTTGTAA 702
Score = 156 bits (84), Expect = 4e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCGCAACTAACGGAGGTTTCGCAGCAGTTCGAGAGGTTTAAAGCTGCGTTTATA 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCGCAACTAATGGAGGTTTCACAGCAGTTCGAGAGGTTTAAAGCTGCGTTTATA 60
Query 61 AGAAAAGATTTCGATTCATGTACCAATCTCTTGTCTCAGCTTAAG 105
| ||||||||||||| | ||| ||| |||||||||||||||||||
Sbjct 61 ATAAAAGATTTCGATACCTGTTCCAGTCTCTTGTCTCAGCTTAAG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5