BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330340
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41970.1 | Symbols: | Metal-dependent protein hydrolase | c... 1868 0.0
> AT5G41970.1 | Symbols: | Metal-dependent protein hydrolase |
chr5:16791182-16793257 FORWARD LENGTH=1434
Length=1434
Score = 1868 bits (1011), Expect = 0.0
Identities = 1084/1120 (97%), Gaps = 2/1120 (0%)
Strand=Plus/Plus
Query 1 ATGTTTTCGGTAACGAAAGGTTTAATCAGAAACTTGAG-CTTGTTCCAAGTTCGTCTTCC 59
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 20 ATGTTTTCGGTAACGAAAGGTTTAATCAGAAACTTG-GCCTTGTTCCAAGTTCGTCTTCC 78
Query 60 TCCTCTCGTAGCAGCAGTAATGGCTCCTTCAAGCGCCGTTAGGGTTTACTCTACTGCTAC 119
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 79 TCCTCTCGTAGCAGCAGTAATGGCTCCTTCAAGCGTCGTTAGGGTTTACTCTACCGCTAC 138
Query 120 CTCTCCTTCTCCTTCTGAGATTTCCGTTAAGAAAGTTGGTACTCATAATGGAAGCTTTCA 179
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 139 CTCTCCTTCTCCTTCTGAAATTTCCGTCAAGAAAGTTGGTACTCATAATGGAAGCTTTCA 198
Query 180 CTGCGACGAAGCTCTCGGTTGCTTCATGATTCGCCTCGTCGATAAATTCTCCGGCGCTGA 239
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 199 CTGCGACGAAGCTCTCGGCTGTTTCATGATTCGCCTCGTCGATAAATTCTCCGGCGCTGA 258
Query 240 TATCGTCCGTTCTCGTGACCCTAAGATATTGGCAGAACTTGATGCAGTGCTTGATGTTGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TATCGTCCGTTCTCGTGACCCTAAGATATTGGCAGAACTTGATGCAGTGCTTGATGTTGG 318
Query 300 AGGTGTTTATGATCCTGAGCATGACCGTTATGATCATCACCAGAAAGGTTTTGAAGAGGT 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AGGTGTTTATGATCCGGAGCATGACCGTTATGATCATCACCAGAAAGGTTTTGAAGAGGT 378
Query 360 TTTTGGACATGGCTTCAACACTAAGCTCAGTAGTGCTGGTCTTGTTTACAAGCATTTTGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TTTTGGACATGGCTTCAACACTAAGCTCAGTAGTGCTGGTCTTGTTTACAAGCATTTTGG 438
Query 420 TAAGGAGATCATAGCTAAAGAACTTAATGTTGAACAAGATCACCCTGATGTTCTTCGGTT 479
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 439 AAAGGAGATCATAGCTAAGGAACTTAATGTCGAACAAGATCACCCTGATGTTCTTCGGTT 498
Query 480 GTTTTTAGCTGTCTATAAGAGCTTCATGGAGGCAATTGATGCTGTGGACAACGGAATAAA 539
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 499 GTTTTTAGCTGTCTACAAGAGCTTCATGGAGGCAATTGATGCTGTGGACAATGGAATAAA 558
Query 540 CCGGTATGATACTGATCAGCCTCCACGATATGTGAACAACACACATCTGTCTGCAAGGGT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 559 CCGGTATGATACTGATCAGCCTCCACGATATGTGAACAACACACATCTGTCTCCAAGGGT 618
Query 600 TGGAAGATTAAATATGGATTGGATTGACCCTGACCAGTCACAAGAAAAGGAGAATGAAGC 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TGGAAGATTAAATCTGGATTGGATTGACCCTGACCAGTCACAAGAAAAGGAGAATGAAGC 678
Query 660 TTTCCAACGTGCAATGGCTCTAGCTGGAAAAGAGTTCCTCGAAAGTGTCCAGTTTCATGC 719
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 679 TTTCCAACGTGCAATGGCTCTAGCTGGAAAAGAGTTCCTCGAAAGTGTTCAGTTCCATGC 738
Query 720 AAGATCATGGTTACCGGCTCGATCAATTGTGATGCAGTGTCTTGAAGAAAGATTCAAGAC 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AAGATCGTGGTTACCGGCTCGATCAATTGTGATGCAGTGTCTTGAAGAAAGATTCAAGAC 798
Query 780 AGACCCCAGTGGTGAGATCATGATATTGAATAAATTTTGCCCTTGGAAGCTTCATTTGTT 839
||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 799 AGACCCCAGCGGTGAGATCATGATATTGGATAGATTTTGCCCTTGGAAGCTTCATTTGTT 858
Query 840 CGAGCTTGAGCAAGAAATAAAGATTGAGCCTCTCATCAAATACGTCATCTACCAGGACGA 899
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 859 CGAGCTTGAGCAAGAAATGAAGATCGAGCCTCTCATCAAATACGTCATTTACCAGGACGA 918
Query 900 GAGAGGAAAGCAATGGAGAGTTCAAGCAGTGGCGGTTGCACCAGACAGGTTTGAGAACCG 959
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 919 GAGAGCAAAGCAGTGGAGAGTTCAAGCAGTGGCGGTCGCACCAGACAGGTTTGAGAACCG 978
Query 960 AAAGCCTCTCCCTGAGAAATGGAGAGGCCTTAGGGATGAGGAGCTCTCTAAAGTTGCTGA 1019
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 979 AAAGCCTCTCCCTGAGAAATGGAGAGGCCTTAGGGATGAGGAACTCTCGAAAGCTGCTGA 1038
Query 1020 GATTCCCGGTTGTGTCTTTGTCCACATGAGTGGCTTTATCGGCGGAAACCAATCGTATGA 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1039 GATTCCCGGTTGTGTCTTTGTCCACATGAGTGGCTTTATCGGCGGAAACCAATCCTATGA 1098
Query 1080 CGGTGCTTTATCCATGGCTCGAACTGCACTCACTCTCTGA 1119
||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 1099 CGGCGCTCTATCCATGGCTCAAACCGCACTCACTCTCTGA 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5