BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330375
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41480.1 | Symbols: EMB9, GLA1, ATDFA, DFA | Folylpolyglutam... 2460 0.0
> AT5G41480.1 | Symbols: EMB9, GLA1, ATDFA, DFA | Folylpolyglutamate
synthetase family protein | chr5:16595927-16598636 FORWARD
LENGTH=1746
Length=1746
Score = 2460 bits (1332), Expect = 0.0
Identities = 1511/1598 (95%), Gaps = 10/1598 (1%)
Strand=Plus/Plus
Query 1 ATGAGGACACTGTGGAGCCACTTGAGTGCCATTTCCAAT-TGCAAAATTTCTCCGAGAAT 59
||||||||||| |||| ||||| ||| |||||||| || | ||||||||||||||||||
Sbjct 41 ATGAGGACACTCTGGAATCACTTTAGTACCATTTCCTATAT-CAAAATTTCTCCGAGAAT 99
Query 60 AAGAAGAATATCTTCAGCAAATCTGACCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 119
|||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 100 GAGAAGAATTTCTGCAGCAAATTTGATCTCAAATCGAAATCTTTCAACCATTTCTTCTAC 159
Query 120 TGAAGATCCCGAGCTCAGAGATTTTGTGGGTTTTTTAGAATCTCTCAAAAACTATGAGAA 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 160 TGAAGATCCCGAGCTCAGAGATTTTGTGGGATTTTTAGAATCTCTCAAAAACTATGAGAA 219
Query 180 ATCAGGTGTTCCAAAAGGAGCTGGAACTGATTCCGGTGATGGATTCGATCTCAGTCGAAT 239
||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 220 ATCAGGTGTACCAAAAGGAGCTGGAACTGATTCTGATGATGGATTCGATCTGGGTCGAAT 279
Query 240 GAAACGTCTCATGCTTCGCCTCCATAATCCTCATTCCAAATACAAGGTTGTTCATGTGGC 299
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 280 GAAACGTCTCATGCTTCGCCTCCGTAATCCTCATTACAAATACAAGGTTGTTCATGTTGC 339
Query 300 TGGAACTAAGGGAAAAGGGTCAACTTCTGCTTTTGTCTCTAATATCTTACGAGCTGGAGG 359
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 340 TGGAACTAAGGGAAAAGGATCAACTTCTGCTTTTCTCTCTAATATCTTACGAGCTGGAGG 399
Query 360 ATATTCAGTTGGTTGTTATTCGAGCCCACATATTTTGAGTATCAAAGAACGTATCTCTTG 419
|||||| |||||||||||||| |||||||||||| |||||||||||||||| || |||||
Sbjct 400 ATATTCTGTTGGTTGTTATTCTAGCCCACATATTCTGAGTATCAAAGAACGGATTTCTTG 459
Query 420 TAATGGAGAGCCTGTCTCTGCATCCACTCTTAATGATCTTTTCTATTCAATCAAACCGAT 479
||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 460 TAATGGAGAACCTGTCTCTGCTTCCACTCTTAATGATCTTTTCTATTCAGTCAAACCGAT 519
Query 480 TCTCGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCTTGAACAGTCTATTCAAGAGGAAAATGGTTCTTTGAGTCATTTTGAGATTCTCACTGG 579
Query 540 GATAGCTTTTTCTTTATTTGAAAAAGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 599
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 580 GATAGCCTTCTCTTTATTTGAAAAGGAAAATGTCGACATTGCGGTTATAGAGGCTGGGCT 639
Query 600 AGGAGGAGCTCGAGATGCTACAAATGTTATTGAAAGTTCCAATCTTGCTGCATCGGTCAT 659
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 640 AGGAGGAGCTCGAGACGCTACAAATGTCATTGAAAGTTCAAATCTTGCTGCATCGGTCAT 699
Query 660 AACAACGATAGGTGAGGAACACATGGCTGCTCTTGGGGGTTCCTTGGAAAGTATAGCAGA 719
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 700 AACAACGATAGGTGAGGAACACATGGCAGCACTTGGGGGTTCCTTGGAAAGTATAGCAGA 759
Query 720 GGCCAAATCTAGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGGCCGTTTCTTCC 779
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 760 GGCTAAATCTGGAATTATTAAACACGGTCGCCCAGTGGTTTTAGGTGGACCGTTTCTTCC 819
Query 780 TCATATCGAGGGTATTCTTCGTTCTAAAGCAGCATCGA-TGTTGTCATCGGTTATTTTGG 838
|||||||||||| ||||| |||||||||||||| || | ||| |||||||||||||||||
Sbjct 820 TCATATCGAGGGCATTCTCCGTTCTAAAGCAGCTTC-AGTGTCGTCATCGGTTATTTTGG 878
Query 839 CATCTAATATTGGATCTAGTTCGTCAATCAAAGACATCATCAACAAAAATGGGATCGGGC 898
|||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 879 CATCTAATATTGGATCTAGTTCTTCAATCAAAGGCATCATTAACAAAAATGGGATCGGGC 938
Query 899 TTTGCCAGTCCTGTGACATCGTGATACAAAATGAGAAAGATGATAAACCAATTGTTGAGC 958
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 939 TTTGCCAGTCCTGTGACATCGTGATACAGAATGAGAAAGATGATCAACCAATTGTTGAGC 998
Query 959 TTAGTGATGTAAATCTACGCATGCTTGGGCATCACCAGCTCCAAAATGCTGTTACTGCCA 1018
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 999 TTAGTGATGTAAACCTACGTATGCTTGGACATCACCAGCTCCAAAATGCTGTTACTGCCA 1058
Query 1019 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 CATGTGTGTCTCTTTGTCTTCGCGATCAAGGATGTGGGAGAGTGACAGATGAAGCAATTA 1118
Query 1079 GGATTGGTTTAGAGAATACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1138
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GGATTGGTTTAGAGAACACTCGTTTACTTGGGAGAAGTCAGTTTCTGACACCAAAAGAAG 1178
Query 1139 CAGAGACTTTACAATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAAT 1198
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1179 CAGAGACTTTACTATTACCCGGAGCAACAGTGCTTCTTGATGGAGCTCACACCAAAGAGT 1238
Query 1199 CAGCGCGAGCTCTAAAGGATATGATAAAGAAAGATTTTGCAGAGAAGAGGATTG-TGTTT 1257
|||||||||| || ||||| ||||||||||| |||||| ||||||| || |||| | |||
Sbjct 1239 CAGCGCGAGCCCTCAAGGAGATGATAAAGAAGGATTTTCCAGAGAAAAG-ATTGGTATTT 1297
Query 1258 GTGGTTGCAATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1317
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GTGGTTGCCATGGCTAGTGACAAAGATCATGTGTCCTTTGCAAAAGAACTTCTCTCAGGT 1357
Query 1318 CTAAAGCCAGAAGCAGTGGTTCTAACAGAAGCTGACATTGGTGGAGGTAAGATTAGATCA 1377
||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1358 CTAAAACCAGAAGCAGTGATTCTAACAGAAGCTGACATCGGTGGAGGTAAGATTAGATCA 1417
Query 1378 ACGTCGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAGGG 1437
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1418 ACGGAGTCTTCGGTGTTGAAAGAATCATGGATAAAAGCTGCTGATGAATTGGGGTCAAGG 1477
Query 1438 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGATTCCTTAAAGCTTGCCTATAAGATT 1497
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1478 TCTATGGAAGCTTCAGAAAACAAAACTGTGTTGGGTTCCTTAAAGCTTGCCTACAAGATA 1537
Query 1498 CTCAGCGATGACAGAAGCA-GTAGTGACTCAGGAATGGTTATCG-CAACGGGTTCACTTC 1555
||||||||||||| || || |||||||||||||||||||||| | || ||||||| ||||
Sbjct 1538 CTCAGCGATGACACAA-CAAGTAGTGACTCAGGAATGGTTATAGTCA-CGGGTTCGCTTC 1595
Query 1556 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1593
||||||||||||||||||||||||||||||||||||||
Sbjct 1596 ACATTGTATCTTCAGTCTTAGCTTCTCTTCAACATTAA 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5