BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330382
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41390.1 | Symbols: | PLAC8 family protein | chr5:16565303-... 1269 0.0
AT1G63830.2 | Symbols: | PLAC8 family protein | chr1:23685319-... 634 0.0
> AT5G41390.1 | Symbols: | PLAC8 family protein | chr5:16565303-16567483
FORWARD LENGTH=1298
Length=1298
Score = 1269 bits (687), Expect = 0.0
Identities = 733/756 (97%), Gaps = 0/756 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 ATGGCGCGTTCGCAGGATAAGCTTGATAAGATGCAACTCCGGCAAAGTTACCGGAATTTA 333
Query 61 TGGCACTCCGATCTCATGAGCACCGTCTCGGCCGATACTCCTTATTGTTTCTTCTCGTGT 120
|||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 334 TGGCACTCCGATCTCATGGGCACCGTCTCGGCGGATACTCCATATTGTTTCTTCTCGTGT 393
Query 121 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAAAGAGCACTTTACAATGACATGTCA 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 394 TTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAGAGAGCACTTTATAATGACATGTCA 453
Query 181 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAAGTGTGGAGAAAGCAAATGC 513
Query 241 CCGCAATTTTGTCTTGCCACTGAGGTGTGTCTCTGTTTCGGGAATTCTGTGGCATCTACT 300
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 514 CCTCAATTTTGTCTTGCCACCGAGGTGTGTCTCTGTTTCGGGAACTCTGTGGCATCTACT 573
Query 301 CGTTTTATGCTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CGTTTTATGTTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCATAATT 633
Query 361 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCATTGTT 693
Query 421 GGAAGTGATGAACTCTCTGAAGCTTCTCAGCTTCTTTCTTGTTTGGCGGATATGGTCTAT 480
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 694 GGAAGTGATGAACTCTCTGAAGCGTCTCAGCTTCTTTCTTGCTTGGCGGATATGGTCTAT 753
Query 481 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TGCACGGTTTGTGCGTGTATGCAGACACAACACAAGATTGAGATGGACAAAAGAGATGGT 813
Query 541 GTGATTAGTCCTCAGCCAATGTCAGTGCCACCGGCTCAGCAAATGTCTCGCATTGATCAA 600
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 814 TTGATTAGTCCTCAACCAATGTCAGTGCCACCAGCTCAGCAAATGTCTCGCATTGATCAA 873
Query 601 CCAGTCCCTCCCTATGCCGGTTACCCTCCAGCTACTGGCTATCCCCAGCATTACTATCCA 660
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 874 CCGGTCCCTCCCTATGCCGGTTACCCTCCAGCCACTGGTTATCCCCAGCATTACTATCCA 933
Query 661 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTTACGGTTACCCT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 934 CAGCCTGGCCATGGTTACCCTCCTGCTCCAGGCTATCCACCTCCCGGTCACGGTTACCCT 993
Query 721 CCTGCACCGGGATATCCGCCAGCTCCGGGATACCCA 756
||||||||||| ||||||||||||||||| || |||
Sbjct 994 CCTGCACCGGGCTATCCGCCAGCTCCGGGCTATCCA 1029
> AT1G63830.2 | Symbols: | PLAC8 family protein | chr1:23685319-23687322
FORWARD LENGTH=1012
Length=1012
Score = 634 bits (343), Expect = 0.0
Identities = 542/637 (85%), Gaps = 18/637 (3%)
Strand=Plus/Plus
Query 1 ATGGCGG-GTTCGCAGGATAAGCTT-GATAAGATGCAACTCCGGCAAAG-TTACCGGAAT 57
||||||| | ||||| |||||| || ||||||||| |||| ||| ||| ||||||||||
Sbjct 90 ATGGCGGCG-TCGCAAGATAAG-TTGGATAAGATGAAACTTAGGC-AAGATTACCGGAAT 146
Query 58 TTATGGCACTCCGATCTCATGAGCACCGTCTCGGCCGATACTCCTTATTGTTTCTTCTCG 117
||||||||||||||||||||| |||||||| | ||||| ||||| ||||| | | |||||
Sbjct 147 TTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCATCTCG 206
Query 118 TGTTTGTGTGGACCTTGCGTTTCATACTTACTTCGGAAAAGAGCACTTTACAATGACATG 177
||| ||||||||||||| || |||||| | ||||||| ||||||||||||||||||||||
Sbjct 207 TGTCTGTGTGGACCTTGTGTGTCATACATGCTTCGGAGAAGAGCACTTTACAATGACATG 266
Query 178 TCAAGGTACACTTGTTGTGGTGGTTACATGCCTTGTAGTGGTAA-GTGTGGAGAAAGCAA 236
|||||||| ||||| |||| ||| || ||||| |||||||| || |||||||||||||||
Sbjct 267 TCAAGGTATACTTGCTGTGCTGGATATATGCCCTGTAGTGG-AAGGTGTGGAGAAAGCAA 325
Query 237 ATGCCCGCAATTTTGTCTTGCCACTGAGGTGTGT-CTCTGTTTCGGGAATTCTGTGGCAT 295
||| || ||| |||| |||||||||||||| | | || || ||||| || |||||||| |
Sbjct 326 ATGTCCTCAACTTTGCCTTGCCACTGAGGTCT-TCCTTTGCTTCGGAAACTCTGTGGCCT 384
Query 296 CTACTCGTTTTATGCTGCAAGATGAATTCAACATCCATACAACAAAATGCGACAATTGCA 355
|||| || ||| | ||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 385 CTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACAATTGCA 444
Query 356 TAATTGGATTTATGTTCTGCCTCAACCAAATCGCTTGCATTTTCTCTCTTGTCGCTTGCA 415
|||||||||||||||||||||||| |||| | |||||||| |||||| | || |||||||
Sbjct 445 TAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTGCTTGCA 504
Query 416 TTGTAGGAAGTGATGAACTCTCTGAAGCTTCTCAGCTTCTTTCTTGTT-TGGCGGATATG 474
|||| || ||||||||||| || || ||||||||| | || ||||| | || | ||||||
Sbjct 505 TTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTG-CTGATATG 563
Query 475 GTCTATTGCACGGTTTGTGCGTGTATGCAGACACAACACAAGA-TTGAGATGGACAAAAG 533
||||| |||||||| || || |||||||||||||||||||| | ||||||||||||||||
Sbjct 564 GTCTACTGCACGGTCTGCGCATGTATGCAGACACAACACAA-ACTTGAGATGGACAAAAG 622
Query 534 AGATGGTGTGATTAG-TCCTCAGCCAATGTCAGTGCCACCGGCTCAGCAAATGTCTCGCA 592
|||||| ||| || | || ||||||||| |||||||| |||||||| ||||||||
Sbjct 623 AGATGGAGTGTTTGGATCG-CAGCCAATGGGTGTGCCACCAGCTCAGCAGATGTCTCGTT 681
Query 593 TTGATCAACCAGTCCCTCC-CTATGCCGGTTACCCTC 628
|||||||||| |||||||| | | | ||| |||||||
Sbjct 682 TTGATCAACCTGTCCCTCCTCCA-GTCGGATACCCTC 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5