BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330390
Length=2982
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41310.1 | Symbols: | P-loop nucleoside triphosphate hydrol... 3432 0.0
AT1G63640.1 | Symbols: | P-loop nucleoside triphosphate hydrol... 580 2e-164
AT2G11280.1 | Symbols: | pseudogene, hypothetical protein | ch... 119 2e-25
> AT5G41310.1 | Symbols: | P-loop nucleoside triphosphate hydrolases
superfamily protein with CH (Calponin Homology) domain
| chr5:16516634-16522392 REVERSE LENGTH=2886
Length=2886
Score = 3432 bits (1858), Expect = 0.0
Identities = 2080/2185 (95%), Gaps = 23/2185 (1%)
Strand=Plus/Plus
Query 544 TTACAAAATACTTCTACACGATCGTTATTTGACATGCTCGATAGGCTTCTTGATGAGAGC 603
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 532 TTACAAAATACTTCTACACGATCGTTGTTTGACATGCTGGATAGGCTTCTTGATGAGAGC 591
Query 604 CCACAGAAGATGAATGTGTCCCATGTTTTTGTATCTATCTTAAGAGGCATTGCGCAAGTT 663
| ||||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||
Sbjct 592 TCGCAGAAGATGAATGTGTCTCATGTTTATGTATCTATCTTGAGAGGCATTGTGCAAGTT 651
Query 664 GTGGAGCAACGGATCTCAAATCAAGCTGAGAACCTAAAAAACCAAAATATACTCTTTAGG 723
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTGAGCAACGGATCTCAAATCAAGCTGAGAACCTAAAAAACCAAAATATACTCTTTAGG 711
Query 724 GTTCGTGAAGAAAAATATAGATCAAGAATAAATGTATTAGAAACTTTGGCATCTGGAACA 783
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 712 GTTCGTGAAGAAAAATATAGATCAAGAATAAATGTTTTAGAAACTTTGGCATCTGGAACA 771
Query 784 ACAGATGAGAATGAGCTAAGGTCAAAAGAAAAAGATGTCCTCCAAATAGAAAAGGAAAAA 843
|||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 772 ACAGATGAGAAT--G---AGGTCAGAAGAAAAAGATGTGCTCCAAATAGAAAAGG-AAAA 825
Query 844 GAGCGTAGTGATGCTGAACTTTCTAAGTTGAAGCAAGAACTTGAAATTGTGAAAGAGACA 903
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GAGCGTAGTAATGCTGAACTTTCTAAGTTGAAGCAAGAACTTGAAATTGTGAAAGAGACA 885
Query 904 CATGAAAAACAGTTTTTGGAACTAGAATC-AAATGCTCAAAAAGCTAAAGTTGAGTTGGA 962
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 886 CATGAAAAACAGTTTTTGGAACTA-AAACTAAATGCTCAAAAAGCTAAAGTTGAGTTGGA 944
Query 963 GAAGCAATTAAAGGAA-TCAGAGTTACGTGTGGTAGAAGCAAAAGAACTTGAGAAGTTAT 1021
|| |||| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 945 GAGGCAAGTAAA-GAATTCAGAGTTACGTGTAGTAGAAGCAAAAGAACTCGAGAAGTTAT 1003
Query 1022 GTGAAACAAAAACTAAAAGATGGGAGAAGAAAGAGCAAACATATAAGAGCTTTATAAACC 1081
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1004 GTGAAACTAAAACTAAAAGATGGGAGAAGAAAGAACAAACATATAAGAGGTTTATAAACC 1063
Query 1082 ACCAGACAGAGGCTTTGCAGGAGTTGAAAGCTACTTCTATGTCTTTAAAACATGAAGTCC 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1064 ACCAGACAGAGGCTTTGCAGGAGTTGAAAGCTACTTCTATGTCTTTAAAACATGATGTAT 1123
Query 1142 TAAAGACAGGAGAGAACTACTTCAAGGATCTAAATTACTATGGTATAAGGCTCAGAGGAG 1201
|||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1124 TAAAGATAGGAGAGAACTACTTCCTGGATCTAACTTACTATGGTATAAAGCTCAGAGGAG 1183
Query 1202 TGGCTCATGCAGCAAAAAATTATCAGATAATCATTGAAGAGAATCGAAGACTTTACAATG 1261
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1184 TGGCTCATGCAGCAAAAAATTACCAGATAATAATTGAAGAGAATCGAAGACTTTACAATG 1243
Query 1262 AAGTGCAAGAATTAAAAGGAAATATTAGAGTGTATTGCCGGATAAGACCATTCCTTCAAG 1321
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1244 AAGTGCAAGAATTAAAAGGAAATATTAGAGTATATTGCCGGATAAGACCATTCCTTCAAG 1303
Query 1322 GACAAAACAAGAAACAAACATCAATAGAGTACACAGGTGAGAATGGTGAACTGGTGGTTG 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GACAAAACAAGAAACAAACATCAATAGAGTACACAGGTGAGAATGGTGAACTGGTGGTTG 1363
Query 1382 CAAATCCCTTAAAGCAAGGCAAAGATACGTATCGGTTATTCAAATTCAACAAAGTCTTTG 1441
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1364 CAAATCCCTTAAAGCAAGGCAAAGATACGTATCGTTTATTCAAATTCAACAAAGTCTTTG 1423
Query 1442 GCCCTGCATCAACTCAAGAGGAAGTTTTCTTAGATACTAGACCGT-TGATTCGATCCATT 1500
|||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 1424 GCCCTGAATCAACTCAAGAGGAAGTTTTCTTAGATACTCGACC-TATGATTCGATCCATT 1482
Query 1501 CTTGATGGCTACAATGTATGTATATTTGCTTACGGCCAGACAGGTTCTGGAAAGACTTAT 1560
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1483 CTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTAT 1542
Query 1561 ACAATGAGTGGACCAAGCATAACTTCAGAAGAAGATTGGGGTGTTAACTATCGAGCTTTG 1620
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1543 ACGATGAGTGGACCAAGCATAACTTCAGAAGAAGATCGGGGTGTTAACTATCGAGCTTTG 1602
Query 1621 AATGACTTGTTCCACTTAACTCAAAGTAGACAAAACTCAGTTATATATGAAGTTGATGTT 1680
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1603 AATGACTTGTTCCACTTAACTCAAAGTAGACAAAACTCAGTGATGTATGAAGTTGGTGTT 1662
Query 1681 CAAATGGTTGAGATTTACAATGAGCAAGTTCGTGATCTACTATCTGAGGATGTTCCTGAT 1740
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 1663 CAAATGGTTGAGATTTACAATGAGCAAGTTCGTGACCTACTTTCTCAGGATGTTCCTGAT 1722
Query 1741 GCAAGCATGCATTCTGTAAAATCAACTGAAGATGTTCTCGAATTGATGAATATTGGGTTG 1800
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 1723 GCAAGCATGCATTCTGTAAGATCAACTGAAGATGTTCTTGAACTGATGAATATTGGGTTG 1782
Query 1801 ATGAATAGAACTGTTGGTGCCACAACCCTTAATGAAAAGAGCAGTAGATCACACAGTGTT 1860
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1783 ATGAATAGAACTGTTGGCGCCACAACCCTTAATGAAAAGAGTAGTAGATCACACAGTGTT 1842
Query 1861 CTTTCTGTTCATGTACGCGGTGTTGATGTCAAAACCGAATCCGTCTTGCGTGGTAGTTTG 1920
||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1843 CTTTCGGTTCATGTACGCGGTGTTGATGTTAAAACGGAATCCGTCTTGCGTGGTAGTTTG 1902
Query 1921 CATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGAGAGAGA 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 CATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGAGAGAGA 1962
Query 1981 CTCAAAGAAGCTCAATATATaaaaaaaTCATTGTCTGCTCTCGGAGATGTTATATTCGCT 2040
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1963 CTCAAAGAAGCTCAACATATAAACAAATCATTGTCTGCTCTCGGAGATGTTATATTCGCT 2022
Query 2041 CTCGCACATAAGAATCCTCATGTACCGTATAGAAACAGCAAGCTAACACAAGTCCTCCAG 2100
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2023 CTAGCACATAAGAATCCTCATGTACCTTATAGAAACAGCAAGCTAACACAAGTCCTCCAG 2082
Query 2101 AATTCTTTAGGAGGACAAGCAAAAACTCTTATGTTTGTTCAAATTAATCCTGATGAAGAT 2160
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2083 AATTCTTTAGGAGGGCAAGCGAAAACTCTTATGTTTGTTCAAATTAATCCTGATGAAGAT 2142
Query 2161 TCATATGCTGAGACTGTAAGTACTTTGAAATTAGCGGAAAGAGTTTCTGGTGTCGAGTTA 2220
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2143 TCATATGCTGAGACTGTAAGTACTTTGAAATTTGCGGAAAGAGTTTCTGGTGTCGAGTTA 2202
Query 2221 GGTGCAGCTAGAAGCTATAAGGAAGGACGAGATGTTAGACAACTCATGGAACAGGTATCG 2280
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2203 GGTGCAGCTAGAAGCTATAAGGAAGGAAGAGATGTTAGACAACTCATGGAACAGGTATCG 2262
Query 2281 AACTTGAGAGATATGATTGCCAAGAAAGATGAAGAACTTCAAAAGTTTCAGAACGTAAAC 2340
||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 2263 AACTTGAAAGATATGATTGCCAAGAAAGACGAAGAACTTCAAAAGTTTCAAAACATAAAT 2322
Query 2341 GTTATCCAAAAACGTGGATTAAGCAAACTAAGAATTGTCTCTCCTACTAGAAGACATTCT 2400
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2323 GGTATCCAAAAACGTGGATTAAGCAAACTAAGAATTGTCTCTCCTCCTAGAAGGCATTCT 2382
Query 2401 TTAGGAGGAGCTTTAACAAATTCTCCAAGAAGAAGACAAGGGTCTGGTTTACTTGGAAGA 2460
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2383 TTAGGAGGAGCTTTAACAAATTCTCCAAGAAGAAGACAAGGACCTGGTTTACTTGGAAGA 2442
Query 2461 ACAACTTCAGAT-TCAGCAGATGAACGTCGCAATCAAAATGAATCTCGATCATCGTCTAA 2519
|||||||||||| | | || | || | | |||||||||||||||||||||||||||
Sbjct 2443 ACAACTTCAGATAT-A-CA--T---CGAC--A-TCAAAATGAATCTCGATCATCGTCTAA 2492
Query 2520 GTTTTCTGGTGGGGCTAAAGACAATGATATATTTGAGGATATTGAACTTTTAGGCCTTGA 2579
||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||
Sbjct 2493 GTTTTCTGGTGGGGCTAAAGACAATAATATATTTGAGGATACTGAACTCTTAGGTTTTGA 2552
Query 2580 AGATTCAGATAATGAGGAAAGATTGAGTGATATCTCTGATAGTTGTCTTTCAATGGGAAC 2639
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2553 AGAATCAAATAATGAGGAAAGATTGAGTGATATCTCAGATAGTTGTCTTTCAATGGGAAC 2612
Query 2640 AGAAACTGATGGCTCGATTAGTAGCGGTGCGATGGGGTTGACACTCTTCCCTGAAACCTC 2699
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2613 AGAAACTGATGGCTCGATTAGTAGCGGTGCAATGGAGTTGACACTCTTCCCTGAAACCTC 2672
Query 2700 AAATCCTCCTGAAATGTTTGAACAA 2724
|||||||||||||||||||||||||
Sbjct 2673 AAATCCTCCTGAAATGTTTGAACAA 2697
Score = 560 bits (303), Expect = 2e-158
Identities = 341/359 (95%), Gaps = 4/359 (1%)
Strand=Plus/Plus
Query 1 ATGAAAAATCGAATCAAAGAAGGATCCAGCATGATTGGTGTTTATGGAAGATCAGATGGA 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAAAAATCGAATCAAAAAAGGATCCAGCATGATTGGTGTTTATGGAAGATCAGACGGA 60
Query 61 TCAAGCAGCATTCTGAGT-TT-TAATGGATCCGAAAGTCGTGAAAGTATAGATGACACTA 118
||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCAAGCAGCATTC--AGTCTTCTAATGGATCCGAAAGTCGTGAAAGTATAGATGACAATA 118
Query 119 AGCAAGGTCATCAAAGTTTAGTAGAATGGTTAAATGAGACACTTCCTTATTTGAATTTAC 178
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 119 AGCAAGGTCATCAAAGTTTAGTAGAGTGGTTAAATGAGACACTTCCTTATTTGAATTTAC 178
Query 179 CATGGGAGGCTTCAGAGGAAGAATTGAGAGCATGTTTGCTGGATGGAACTGTCTTGTGCA 238
||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 179 CATGGGAAGCTTCAGAGGAAGAATTGAGAGCATGTTTGGTGGATGGTACTGTCTTGTGCA 238
Query 239 ATCTCTTGAATCAGCTTAGTCCCGGTTCGATGCGAATGGGAGGTAGCTTTGAGCCTGGTT 298
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 239 ATCTCTTAAATCAGCTTAGTCCCGGTTCGATGCGAATGGGAGGAAGCTTCGAGCCTGGTT 298
Query 299 GCGTAAATAATGAGCGGTTTTTGGCAGCTATGGATGAAATGGCATTGCCGAGATTTGAG 357
| ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 299 GTGTAAATATTGAGCGGTTTTTGGCAGCTATGGATGAAATGACATTGCCCAGATTTGAG 357
Score = 183 bits (99), Expect = 6e-45
Identities = 141/161 (88%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 2824 GTTGGAACATCAAAGCCAGTGAAGCATACACCAAGAGCAGACAAAACCAGACCTTCTCGT 2883
|||||| ||||||||||| |||| |||||||||| | |||||| || | ||||||||||
Sbjct 2728 GTTGGACCATCAAAGCCACTGAAACATACACCAAAACCAGACATAAGTAAACCTTCTCGT 2787
Query 2884 CTGTCGATTTCTAAC-ACTTCAGCTAAGGCTTTAACAAGTTCTAAAAGACCAATCACTGG 2942
||||||||||| || || ||| |||||||||||||||||||||||||||| |||||||
Sbjct 2788 CTGTCGATTTC-CACTACCTCATCTAAGGCTTTAACAAGTTCTAAAAGACCGGTCACTGG 2846
Query 2943 -ATTTTCATCTTCAGTAAAACCTCTTAACATTAAGAGATAA 2982
|||| |||||||||||||||||||||||| |||||||||
Sbjct 2847 CATTT-CATCTTCAGTAAAACCTCTTAACAGAAAGAGATAA 2886
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 382 AGTCTCTTAAGGCACTTAAAGCTAGTTTCTCTGATGATGGATATGATAAGAATACACTTT 441
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AGTCTCTTAAGGCGCTTAAAGCTAGTTTCTCTGATGATGGATATGATAAGAATACACTTT 415
Score = 102 bits (55), Expect = 2e-20
Identities = 64/68 (94%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 444 AGTTGATAGCAACTTTAATGATGGAGGATCACAGTTTA-AGGAAGCATCTGAGATCAATA 502
|||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 459 AGTTGATAGCAACTTTAATGATGGAGGATCACAGTTTATAG-AAGCATCTGAGATTAATA 517
Query 503 CGTCTCAT 510
| ||||||
Sbjct 518 CATCTCAT 525
> AT1G63640.1 | Symbols: | P-loop nucleoside triphosphate hydrolases
superfamily protein with CH (Calponin Homology) domain
| chr1:23589043-23595821 REVERSE LENGTH=3673
Length=3673
Score = 580 bits (314), Expect = 2e-164
Identities = 511/608 (84%), Gaps = 6/608 (1%)
Strand=Plus/Plus
Query 1735 CCTGATGCAAGCATGCATTCTGTAAAATCAACTGAAGATGTTCTCGAATTGATGAATATT 1794
||||||||||||||||||| ||| | |||||| ||||||||||| ||| |||||||||||
Sbjct 2187 CCTGATGCAAGCATGCATTGTGTGAGATCAACAGAAGATGTTCTTGAACTGATGAATATT 2246
Query 1795 GGGTTGATGAATAGAACTGTTGGTGCCACAACCCTTAATGAAAAGAGCAGTAGATCACAC 1854
|| | ||||| ||||| || ||||| ||| | || ||||||| ||||||||||||||||
Sbjct 2247 GGACTAATGAACAGAACCGTGGGTGCTACAGCTCTCAATGAAAGGAGCAGTAGATCACAC 2306
Query 1855 AGTGTTCTTTCTGTTCATGTACGCGGTGTTGATGTCAAAACCGAATCCGTCTTGCGTGGT 1914
||||||||||||| |||||||| ||||| || || ||||||| || | ||||| ||
Sbjct 2307 TGTGTTCTTTCTGTCCATGTACGAGGTGTCGACGTGGAAACCGATTCAATTTTGCGGGGC 2366
Query 1915 AGTTTGCATTTGGTTGATCTTGCTGGAAGTGAGAGAGTTGGTCGCTCTGAAGTAACCGGA 1974
||||||||||| ||||| ||||||||||||||||| |||| ||||||||| | |||||||
Sbjct 2367 AGTTTGCATTTAGTTGACCTTGCTGGAAGTGAGAGGGTTGATCGCTCTGAGGCAACCGGA 2426
Query 1975 GAGAGACTCAAAGAAGCTCAATATATaaaaaaaTCATTGTCTGCTCTCGGAGATGTTATA 2034
||||| ||||| |||||||| |||| || ||||||||||| || || || ||||| |||
Sbjct 2427 GAGAGGCTCAAGGAAGCTCAGCATATCAACAAATCATTGTCAGCACTTGGGGATGTCATA 2486
Query 2035 TTCGCTCTCGCACATAAGAATCCTCATGTACCGTATAGAAACAGCAAGCTAACACAAGTC 2094
|| ||| | || || ||||| |||||||| || || ||||||||||| | || ||||||
Sbjct 2487 TTTGCTTTAGCGCACAAGAACCCTCATGTTCCTTACAGAAACAGCAAATTGACTCAAGTC 2546
Query 2095 CTCCAGAA-TTCTTTAGGAGGACAAGCAAAAACTCTTATGTTTGTTCAAATTAATCCTGA 2153
|| || || |||||| || ||||| || ||||||||||||||||| ||| | ||||||||
Sbjct 2547 CTTCA-AAGTTCTTTGGGTGGACAGGCTAAAACTCTTATGTTTGTCCAAGTCAATCCTGA 2605
Query 2154 TGAAGATTCATATGCTGAGACTGTAAGTACTTTGAAATTAGCGGAAAGAGTTTCTGGTGT 2213
|| ||||| ||||||||||| ||||| ||||||||||| || ||||| |||||||||||
Sbjct 2606 TGGCGATTCTTATGCTGAGACAGTAAGCACTTTGAAATTCGCCGAAAGGGTTTCTGGTGT 2665
Query 2214 CGAGTTAGGTGCAGCTAGAAGCTA-TAAGGAAGGACGAGATGTTAGACAACTCATGGAAC 2272
||||||||||| || | ||| || ||| || || |||||||| ||||||||||||||||
Sbjct 2666 GGAGTTAGGTGCTGCCAAAAG-TAGTAAAGAGGGTCGAGATGTAAGACAACTCATGGAAC 2724
Query 2273 AGGTATCGAACTTGAGAG-ATATGATTGCCAAGAAAGATGAAGAACTTCAAAAGTTTCAG 2331
||||||||||||||| || || | ||||| |||||||||||||| || ||||| ||||||
Sbjct 2725 AGGTATCGAACTTGA-AGGATGTAATTGCTAAGAAAGATGAAGAGCTACAAAATTTTCAG 2783
Query 2332 AACGTAAA 2339
|| |||||
Sbjct 2784 AAGGTAAA 2791
Score = 150 bits (81), Expect = 6e-35
Identities = 165/204 (81%), Gaps = 12/204 (6%)
Strand=Plus/Plus
Query 2515 TCTAAGTTTTCTGGTGGGGCTAAAGACAAT-GA-TAT-AT-TTGAGGATATTGAACTTTT 2570
||||| ||| |||||| ||| |||| ||| || | | || ||| ||| ||||||| |
Sbjct 3033 TCTAAATTTGCTGGTGCGGCGAAAG-GAATCGATTTTGATGATGAAGATGTTGAACTCGT 3091
Query 2571 AGGCCTTGAAGATTCAGATAATGAGGAAAGATTGAGTGATATCTCTGATAGTTGTCTTTC 2630
||| |||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 3092 AGGTCTTGCAGATGCAGATTCTGAGGACAGATTGAGTGATATCTCTGATAGTTGTCTTTC 3151
Query 2631 AATGGGAACAGAAACTGATGGCTCGATTAGTAGCGGTGC-GATGGGGTTGACACTCTTCC 2689
||||||||||||||||||||| || || | ||| |||| | | | |||||| || ||||
Sbjct 3152 AATGGGAACAGAAACTGATGGATCCAT-A--AGCAGTGCAG-TAGAGTTGACTCTATTCC 3207
Query 2690 CTGAAACCT-CAAATCCTCCTGAA 2712
||||||| | | || |||| ||||
Sbjct 3208 CTGAAAC-TGCTAAGCCTCTTGAA 3230
> AT2G11280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:4486266-4487577 FORWARD LENGTH=1312
Length=1312
Score = 119 bits (64), Expect = 2e-25
Identities = 120/146 (82%), Gaps = 7/146 (5%)
Strand=Plus/Minus
Query 2553 TGAGGATATTGAACTTTTAGGCCTTGAAGATTCAGA-TAATGAGGAAAGATTGAGTGATA 2611
||| ||| ||||||| |||| |||| |||| |||| | |||||| |||||||||||||
Sbjct 918 TGAAGATGTTGAACTCGTAGGTCTTGCAGATGCAGACT-CTGAGGACAGATTGAGTGATA 860
Query 2612 TCTCTGATAGTTGTCTTTCAATGGGAACAGAAACTGATGGCTCGATTAGTAGCGGTGC-G 2670
||||||||||||||||| || |||||||| |||||||||| || || | ||| |||| |
Sbjct 859 TCTCTGATAGTTGTCTTCCAGTGGGAACATAAACTGATGGATCCAT-A--AGCAGTGCAG 803
Query 2671 ATGGGGTTGACACTCTTCCCTGAAAC 2696
| | |||||| || |||||||||||
Sbjct 802 -TAGAGTTGACTCTATTCCCTGAAAC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148243316565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5