BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330452
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40570.2 | Symbols: | Surfeit locus protein 2 (SURF2) | chr... 994 0.0
> AT5G40570.2 | Symbols: | Surfeit locus protein 2 (SURF2) | chr5:16246786-16248390
FORWARD LENGTH=787
Length=787
Score = 994 bits (538), Expect = 0.0
Identities = 607/639 (95%), Gaps = 9/639 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGAAGAAGGCGAAAGAAGGGAAGAGTCTGTTTGGGTCTCCGACGTTCGTTGAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ATGATGAAGGAGAAGGCGAAAGAAGGGAAGAGTCTGTTTGGGTCTCCGACGTTCGTTGAT 72
Query 61 CTTGGAAACGGACGACTCAGATGCGTCGAGACTGGTGACGATGTTTTAGCCGGAGACGTA 120
|||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 73 CTTGGAAACGGACGGCTCAGATGCGTCGAGACTGGTCACGAGGTTTTAGCGGGAGACGTA 132
Query 121 GAATCATACGCTCGTAACAAACGGTGTCGTTTAGGACTCATCGATCACGCTTTGTCTC-A 179
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 133 GAATCATACGCTCGTAACAAACGGTGTCGTTTAGGACTCATCAATCACGCTTTGTCTCTA 192
Query 180 GGGAAAGTCTCCTCTCAACATGTTCTCGCAATGCCCACTTTCTCGCATCGAAAATGGTTT 239
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GG-AAAGCCTCCTCTCAACATGTTCTCGCAATGCCCACTTTCTCGCATCGAAAATGGTTT 251
Query 240 AAA---CTCGAAACTCGTGTGCAAGCTTACTGGGGATACTGTGAACAAGAACGAGGAACA 296
||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 252 AAAGTTCTCGAAACTTGTGTGCAAGCTAACTGGAGATACTGTGAACAAGAACGAGGAACA 311
Query 297 TATCTGGAAACACGTGAATGGCAGAAGATTTCTTCACAAATTAGAGCAAGTGGAAAGAGG 356
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 312 TATCTGGAAACACGTGAATGGGAAAAGATTTCTTCACAAATTAGAGCAAGTGGAAAGAGG 371
Query 357 AGCTGGATCAAGTGGAAGGACTGAGAAAACACAAGTAACCAAACCAAGACACAAGAAGGA 416
|||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 372 AGCTGGATCAAGCGGAAGGACTGAGGAAACACAAGTAAACAATCCAAGACACAATAAGGA 431
Query 417 AGATTCTGGTTCCGAGGAATCCGACTTTTGGATGC-TCAAGTCAAGTTCTGATTCAGAGT 475
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 432 AGATTCTGGTTCTGAGGAATCCGACTTTTGGATGCCT-AAGTCAAGTTCTGATTCAGAGT 490
Query 476 CAGATGAAGAGACTGATGAAGGAAACTGTAAAGGTTCTCATTGTGATGCCAAAGAATCTG 535
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 491 TAGATGAAGAGACTGATGAAGAAAACTGTAAAGGTTCTCATTGTGATGACAAAGAATCTG 550
Query 536 AAGAGCTCTCAGAAAGAACAAAGAGAATGTCTA-TAGAGATTGGACCAAGTAGTTTTGCT 594
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 551 AAGAGCTCTCAGAAAGAACAAAGAGAATGTC-ACTAGAGATTGGACCAAGTAGCTTTGCT 609
Query 595 TCTAGGAAGAAAAAGAGTAAGAATGATGAGTCGTCTTAA 633
||||||||||||||||||||||||||||||| |||||||
Sbjct 610 TCTAGGAAGAAAAAGAGTAAGAATGATGAGTTGTCTTAA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5