BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330454
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40550.1 | Symbols: | SGF29 tudor-like domain | chr5:162410... 1155 0.0
AT3G27460.1 | Symbols: | SGF29 tudor-like domain | chr3:101592... 780 0.0
> AT5G40550.1 | Symbols: | SGF29 tudor-like domain | chr5:16241068-16243381
FORWARD LENGTH=1320
Length=1320
Score = 1155 bits (625), Expect = 0.0
Identities = 682/707 (96%), Gaps = 13/707 (2%)
Strand=Plus/Plus
Query 1 ATGTCGTCACCAGACATTGTCGGAATTCTGGAAAACACGAAGGAACTTGATCGGTTAAGG 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 218 ATGTCGTCACCAGACATTGTCGGAATTTTGGAAAACACGAAGGAACTTGATCGGTTAAGG 277
Query 61 AAAGAACAAGAAGAAGTTTTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AAAGACCAAGAAGAAGTTTTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 337
Query 121 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTGGCAAAGCTTAAGAATTTGTACATT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 338 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTAGCAAAGCTTAAGAATTTGTACATT 397
Query 181 CAAGCGAAAGAGCTCTCCGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAATTG 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 398 CAAGCGAAAGAGCTCTCAGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAGTTG 457
Query 241 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAATTA--------GG-A 291
|||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 458 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAGTTAGGCGTGGTGGCA 517
Query 292 GAAGGCAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 GAAGGTAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 577
Query 352 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGT-TTAAAGGGTGAACAGGTTGCTGC 410
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 578 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGTCTTAA-GGGTGAACAGGTTGCTGC 636
Query 411 AAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTAATTCACTT 470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 637 AAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTT 696
Query 471 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 756
Query 531 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTCATGCATTTTACCATTTCCCAAA-CGTA 589
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
Sbjct 757 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTTATGCATTTTACCATT-CCCAAAGCGAA 815
Query 590 ACGATCCTTCGAACACCCAAGAGTTTCCAACGAGTAAACACGTCTTAGCTGTATATCCCG 649
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 816 ACGATCCTTCGAACACCCAAGAGTTTCCACCGGGTAAACACGTCTTAGCTGTATATCCCG 875
Query 650 GGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG 696
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG 922
Score = 174 bits (94), Expect = 1e-42
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 774 GTACTTGCTTGAATTCGACGATGATGAGGAAAATGGAGCATTGCCTCAAAGAACTGTACC 833
||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 937 GTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACC 996
Query 834 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGTGA 876
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGTGA 1039
> AT3G27460.1 | Symbols: | SGF29 tudor-like domain | chr3:10159293-10162259
REVERSE LENGTH=1322
Length=1322
Score = 780 bits (422), Expect = 0.0
Identities = 611/701 (87%), Gaps = 17/701 (2%)
Strand=Plus/Plus
Query 3 GTCGTCACCAGACATTGTCGGAATTC-TGGAAAACACGAAGGAACTTGATCGGTTAAGGA 61
|||||| || ||||||| ||||| || | || || |||||||| |||||||||||||| |
Sbjct 271 GTCGTCGCCGGACATTGCCGGAA-TCTTAGATAATACGAAGGAGCTTGATCGGTTAAGAA 329
Query 62 AAGAACAAGAAGAAGTT-TTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 120
|||||||||| |||||| || || ||||| |||||||||||||| |||||||||||| |
Sbjct 330 AAGAACAAGAGGAAGTTCTT-GTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCTACG 388
Query 121 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTGGCAAAGCTTAAGAATTTGTACATT 180
|| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 389 CCGGAGATAGTTGAGAAGCCTGGTGATATTTCATTGTCAAAGCTTAAAAATTTGTACATT 448
Query 181 CAAGCGAAAGAGCTCTCCGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAATTG 240
||||| |||||||| || |||| |||||||||||| || || ||| |||||||||| |||
Sbjct 449 CAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAATATTCTGCTTACTCAGTTG 508
Query 241 GATT-TGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAATTAGGAGAAGGCAA 299
|||| | |||||||||| ||||||||| ||||| ||| | |||||||| |||||||||
Sbjct 509 GATTCT-CTGCTTCCATCTGGACCAACTGGGCAACAACGCAGAAAATT---AGAAGGCAA 564
Query 300 TGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCTCCTTCCAT 359
|| |||||||| ||||| |||||||| ||| ||||||||| |||| |||||||||||||
Sbjct 565 CGAACAGAAGAGAAAGAGAATGAAAGTAGATACAGATGTAACAAGAGTTTCTCCTTCCAT 624
Query 360 GAGAAATCAAATCGAAGCATATGCAAGTTTAAAGGGTGAACAGGTTGCTGCAAGAGTTAC 419
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 625 GAGAAATCAAATCGAGGCATATGCTAGTCTAAAGGGTGAACAGGTTGCTGCAAGAGTCAC 684
Query 420 TGCAG-AGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTAATTCACTTCGATAGAG 478
|| | ||| ||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 685 AGCTGAAGA-TGCCGAGAAGGATGAATGGTTTGTGGTGAAAGTTATTCACTTCGACAGAG 743
Query 479 AAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAAGCGGTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 744 AAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGGAGGTGGCC 803
Query 539 AGAGGACCTATAAGTTGCCAATGTCATGCATTTTACCATTTCCCAAACGTAACGATCCTT 598
||||||| ||||| | |||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 804 AGAGGACGTATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAATGATCCTT 863
Query 599 CGAA-CACCCAAGAGTTTCCAAC-GAGTAAACACGTCTTAGCTGTATATCCCGGGACAAC 656
| || ||| ||||||||| | | | | ||||||||||||||||||||||| || || ||
Sbjct 864 C-AAGCACACAAGAGTTTATACCAGGG-AAACACGTCTTAGCTGTATATCCAGGAACCAC 921
Query 657 AGCACTCTACAAAGCAACTGT-AGTAAGTACCCCACGAAAG 696
||| |||||||| |||||||| | |||||||||||||||||
Sbjct 922 AGCCCTCTACAAGGCAACTGTTA-TAAGTACCCCACGAAAG 961
Score = 126 bits (68), Expect = 3e-28
Identities = 90/101 (89%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 774 GTACTTGCTTGAATTCGACGATGATGAGGAAAATGGAGCATTGCCTCAAAGAACTGTACC 833
||||||||| ||||| || |||||||| ||| | |||||||| ||||||||||| || ||
Sbjct 976 GTACTTGCTAGAATTTGATGATGATGAAGAAGACGGAGCATTACCTCAAAGAACAGTGCC 1035
Query 834 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGT 874
||||||||||||||||||||||||||||| ||||||||||
Sbjct 1036 ATTCCACAAAGTGGTAGCTTTACCAGAAGGCCATCGCCAGT 1076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5