BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330455
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40530.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1230 0.0
> AT5G40530.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:16234497-16236222
FORWARD LENGTH=1210
Length=1210
Score = 1230 bits (666), Expect = 0.0
Identities = 720/747 (96%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 1 ATGACGACTGAGGAAAGTACAACAAGCAGAAATAGGAAGAGGAAGAGACAGAGAAACCCT 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ATGACGACTGAGGAAAATAAAACAAGCAGAAATAGGAAGAGGAAGAGACAGAGAAACCCT 114
Query 61 AAACCTTCTAAAGAAGAACCTATCGACACGACACCGAAGAACCAAAACAACAAAAAGAGT 120
|||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||| |
Sbjct 115 AAACCTTCTAAAGAAGAACCTATCGAGACGACACCGAAGAATCAAAACGAGAAAAAGAAT 174
Query 121 CAGAGAGATACCAAAGTTCAGCAACATGGAGGTTCTTCAGCTTCATCGAAACGACCAAAA 180
|| |||||||||||| || ||||||||||||||||||||| ||||||||||||| |||
Sbjct 175 CAAAGAGATACCAAAAACCAACAACATGGAGGTTCTTCAGCTCCATCGAAACGACCTAAA 234
Query 181 CCTTCCAATTTCCTCGATGCGCTTCGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 235 CCTTCCAATTTCCTCGATGCGCTTAGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTC 294
Query 241 AATGAGAAACTCTACACTTGCTCTGGAAAAGAAGCATTAGACTACTTTAAAGAAGATCCA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 295 AATGAGAAACTCTACACTTGCTCTGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCA 354
Query 301 GAAATGTTTGATATGTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CAAATGTTTGATATGTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTT 414
Query 361 CCTGTTAACTCCATTATTAATTGGCTATTGTCTAAGAGCTCTTCTTTAGTTGTGGCTGAT 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 415 CCTGTTAACTCCATTATTAATTGGCTATTGTCTAATAGCTCTTCTTTAGTTGTGGCTGAT 474
Query 421 TTTGGCTGTGGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTGGCTGTGGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGAT 534
Query 481 CTTGTCTCAAAGAACCCCTCTGTTATTGCCTGTGATATGTCAAATACTTCACTTGAGTCT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 535 CTTGTCTCAAAGAACCCCTCTGTTATTGCCTGCGATATGTCAAATACTTCACTTGAGTCT 594
Query 541 TCATCGGTGGATGTTGCTGTTTTCTGTCTTTCGTTAATGGGAACAAACTATTCTAGTTAC 600
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 595 TCATCAGTGGATGTTGCAGTTTTCTGTCTTTCATTAATGGGAACAAACTATTCTAGTTAT 654
Query 601 ATCAAAGAGGCACATCGAGTTCTTCGTCCAAGTGGTATGCTTCTTATAGCGGAGGTAAAG 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 ATCAAAGAAGCACATCGAGTTCTTCGTCCAAGTGGTATGCTTCTTATAGCGGAAGTAAAG 714
Query 661 AGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCTAAAGACTTTGTGAAAGCAGTTTGT 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 715 AGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCAAAAGACTTTGTGAAAGCCGTTTGT 774
Query 721 GATCTTGGATTTACTTCGGTTTTAAAG 747
|||||||||||||||||||||||||||
Sbjct 775 GATCTTGGATTTACTTCGGTTTTAAAG 801
Score = 110 bits (59), Expect = 3e-23
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 815 AGGAGCAGGTGGATTCAGATCAGAAGATAATAAAGTGGCCTGAGTTGAAAGCATGTTTAT 874
|||||||| || ||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1015 AGGAGCAGATGAATTCAAATCAGAAGATAATAAAGTGGCCTGAGTTAAAAGCTTGTTTAT 1074
Query 875 ACAAACGTCGATGA 888
||||||||||||||
Sbjct 1075 ACAAACGTCGATGA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5