BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330465
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT2G25230.1 | Symbols: MYB100, AtMYB100 | myb domain protein 10... 859 0.0
AT5G40430.1 | Symbols: MYB22, AtMYB22 | myb domain protein 22 |... 848 0.0
> AT2G25230.1 | Symbols: MYB100, AtMYB100 | myb domain protein
100 | chr2:10747211-10748467 REVERSE LENGTH=705
Length=705
Score = 859 bits (465), Expect = 0.0
Identities = 629/708 (89%), Gaps = 12/708 (2%)
Strand=Plus/Plus
Query 91 ATGaaaaaaacttatcaaaagaagaaaaaaaaGGCGGTGAGCACAAGCAAATATTTGAAG 150
|||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1 ATGAAAAAAAATTATCAAAAGAAGAATATAAAGGTGGTGAGCACAAGCAAATATTTGAAG 60
Query 151 AACAGTGACATC-ATCAAAGTAAAATGGACAGAATCTGAGGACATAAAATTGAAAGAGCT 209
|| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 61 AAAAGTGACATCGA-CAAAGTAAACTGGACAGAATCTGAGGACATAAAATTGAAAGAGAT 119
Query 210 AATGGCGCTTGGGCTCC---AA-AAATGGACAACGATCGCAAAAAAGTTTGAAGGACGAA 265
|||||||||||| | || || |||||||||| | |||||||||| || |||||| |||
Sbjct 120 AATGGCGCTTGGAC-CCAAAAACAAATGGACAAAGGTCGCAAAAAAATTCGAAGGAAGAA 178
Query 266 CAGGAAAACAATGCAGAGAGAGGTGGCATAACCATGCTGGTCCTGACATTAAGAAAACTA 325
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 179 CAGGAAAACAATGCAGAGAGAGGTGGTATAACCATGCTCGTCCTAACATTAAGAAAACTG 238
Query 326 AATGGAGTGAAGAAGAAGAACAAATATTGATTGAAGAACACAAAGTAGTTGGTACCCAAT 385
||||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||
Sbjct 239 CTTGGAGTGAAGAAGAAGATCAAATTTTGATTGAAGCACACAAAGTACTTGGTACCAAAT 298
Query 386 GGATCAAGATCGCACAGAAACTTCCGGGGAGGAGCTATAACAATGTTAAGAACCATTGGA 445
|| || ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 299 GGGTCGAGATCGCACAGCAACTTCCGGGGAGGAGCGATAACAATATTAAGAACCATTGGA 358
Query 446 ACAGCACAAAGCGTAAGGTGCAAAATCAAAGTGGTGGAACTGTCAAACCTGTCGGCAATA 505
||| |||||||||| |||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 359 ACACCACAAAGCGTCGGGTGCAAAATAAAAGAGGTGGAACTGTCAACCCTGTCGGCAATA 418
Query 506 ACATCCTTGAAAACTACATAAGGTATGTCACAATCAACAACGATGATTTTCTCAAGACCG 565
|||||||||||||||||||||||| | |||||||||||||||| |||||||| |||||||
Sbjct 419 ACATCCTTGAAAACTACATAAGGTGTATCACAATCAACAACGAAGATTTTCTTAAGACCG 478
Query 566 CTGAATCCGATGGTGAAACAACAAACAGTGAGAATGATGATGACTCTATAGATATGTTAT 625
|| ||| |||||||| | ||||||| ||||| |||||||||||||| |||||||||||
Sbjct 479 ATGGATCTTATGGTGAACCGACAAACATTGAGAGTGATGATGACTCTAAAGATATGTTAT 538
Query 626 ATGGGGAGATGAATTTGAGTCTGGAGGCTACAGCG--G-AGACCACCAAACCATTGACCG 682
| |||||||||||||||||||| ||| ||| | || | ||||||||||||||||||||
Sbjct 539 ACGGGGAGATGAATTTGAGTCTAGAGACTATAACGACGCAGACCACCAAACCATTGACCA 598
Query 683 ATGCTTCTACAATATTACCTTATATTCCGATGCCAGAAGAGAATTCTACTGTGGAGGTTT 742
|||||||||||| || ||||||| ||| |||||||||||| |||| |||| |||||| ||
Sbjct 599 ATGCTTCTACAACATCACCTTATGTTCAGATGCCAGAAGATAATTATACTATGGAGGATT 658
Query 743 GTAAAACAATGGAGGACATACTGGAGCTGCT-CAGTTGGTGGGAATAA 789
|| || || |||||||||| || |||||||| | ||||||||||||||
Sbjct 659 GTGAATCACTGGAGGACATTCTAGAGCTGCTGC-GTTGGTGGGAATAA 705
> AT5G40430.1 | Symbols: MYB22, AtMYB22 | myb domain protein 22
| chr5:16176427-16177731 REVERSE LENGTH=771
Length=771
Score = 848 bits (459), Expect = 0.0
Identities = 692/799 (87%), Gaps = 38/799 (5%)
Strand=Plus/Plus
Query 1 ATGGGTGAACCTCAATCATTTGATGTGCCAGTGCCAAAAGGTATCAAAAACACAACCAAA 60
|||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1 ATGGGTGAACCTCAATTATTTGATGTGCCAGTGCTAGAAGGTATCAAAAATACAACCAAC 60
Query 61 GAAATCATGAATCAACGTGAAGATGGTAAGATGaaaaaaacttatcaaaagaagaaaaaa 120
|||||||||||||||| |||||||| ||||||||||||||||||| | |||| |||
Sbjct 61 GAAATCATGAATCAACTTGAAGATGATAAGATGAAAAAAACTTAT-----G-AGAATAAA 114
Query 121 aaGGCGGTGAGCACAAGCAAATATTTGAAGAACAGTGACATCATCAAAGTAAA-ATGGAC 179
|||| || |||||||||||||||||||||||| |||||||||| |||| ||| ||||||
Sbjct 115 AAGGAGGCGAGCACAAGCAAATATTTGAAGAAAAGTGACATCACCAAA-AAAAGATGGAC 173
Query 180 AGAATCTGAGGACATAAAATTGAAAGAGCTAATGGCGCTTGGGCTCC-AAAAATGGACAA 238
|||||||||||||||||||||||||||| | |||| |||| | || ||||||||||||
Sbjct 174 AGAATCTGAGGACATAAAATTGAAAGAGATGGTGGCACTTGAAC-CCAAAAAATGGACAA 232
Query 239 CGATCGCAAAAAAGTTTGAAGGACGAACAGGAAAACAATGCAGAGAGAGGTGGCATAACC 298
| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 233 AGGTCGCAAAACATTTTGAAGGACGAACACCAAAACAATGCAGAGAGAGGTGGCATAACC 292
Query 299 ATGCTGGTCCTGACATTAAGAAAACTAAATGGAGTGAAGAAGAAGAACAAATATTGATTG 358
||||| ||||| || |||||||||||| ||||||||||||||||| |||||| | ||||
Sbjct 293 ATGCTCGTCCTAACGTTAAGAAAACTACTTGGAGTGAAGAAGAAGATCAAATACTAATTG 352
Query 359 AAGAACACAAAGTAGTTGGTACCCAATGGATCAAGATCGCACAGAAACTTCCGGGGAGGA 418
||| |||||||||| ||||| || |||||||| ||||| || || |||||||||||||||
Sbjct 353 AAGTACACAAAGTAATTGGTGCCAAATGGATCCAGATCTCAGAGCAACTTCCGGGGAGGA 412
Query 419 GCTATAACAATGTTAAGAACCATTGGAACAGCACAAAGCGTAAGGTGCAAAATCAAAGTG 478
|||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||
Sbjct 413 GCTATAACAATGTTAAGAACCATTGGAATACCACAAAGCGTCGGGTGCAAAATAAAAGTG 472
Query 479 GTGGAACTGTCAAACC-TGTCGGCAATAACATCCTTGAAAACTACATAAGGTA-TGTCAC 536
|| |||||||||| || |||||||||||||||||||||||||||||||||| | | ||||
Sbjct 473 GTCGAACTGTCAA-CCGTGTCGGCAATAACATCCTTGAAAACTACATAAGG-AGTATCAC 530
Query 537 AATCAACAACGATGATTTTCTCAAGACCGCTGAATCCGATGGTGAAACAACAAACAGTGA 596
|||||||||||||||| || | || ||||||||| | ||||||| |||
Sbjct 531 AATCAACAACGATGAT--------GA------A-TCTGATGGTGAACCGACAAACATTGA 575
Query 597 GAATGAT---GATGACTCT-ATAGATATGTTATATGGGGAGATGAATTTGAGTCTGGAGG 652
|||| || ||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 576 GAATTATCATGATGACTCTGA-AGATATGTTATATGGGGAGATGAATTTGAGTCCAGAGG 634
Query 653 CTACAGCGGAGACCACCAAACCATTGACCGATGCTTCTACAATATTACCTTATATTCCGA 712
||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 635 CTATAACGCAGACCACCAAACCATTGACCGATGCTTCTACAATATCACCTTATATTCCGA 694
Query 713 TGCCAGAAGAGAATTCTACTGTGGAGGTTTGTAAAACAATGGAGGAC-ATACTGGAGCTG 771
||||| |||| || | |||| ||||||||||| || || |||||||| || || ||||||
Sbjct 695 TGCCAAAAGAAAACTATACTCTGGAGGTTTGTGAATCACTGGAGGACTAT-CTAGAGCTG 753
Query 772 CT-CAGTTGGTGGGAATAA 789
|| | |||||||||| |||
Sbjct 754 CTGC-GTTGGTGGGATTAA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5