BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330471
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40360.1 | Symbols: MYB115, AtMYB115 | myb domain protein 11... 828 0.0
> AT5G40360.1 | Symbols: MYB115, AtMYB115 | myb domain protein
115 | chr5:16145141-16146621 FORWARD LENGTH=1201
Length=1201
Score = 828 bits (448), Expect = 0.0
Identities = 651/744 (88%), Gaps = 33/744 (4%)
Strand=Plus/Plus
Query 1 ATGTATCACCAAAATCAGATTTCATCAACCCCAAACCAAAATTCCGATCCTCACAATTGG 60
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 80 ATGTATCACCAAAATCTGATTTCATCGACCCCAAACCAAAATTCTAATCCTCACGATTGG 139
Query 61 GATATTCAAAATCGTTTATTTTCCAGACATCCTTCAATTGAAATACCCACAAAAAATCCA 120
||||||||||||| ||||||||||| |||||||||| |||||||||| ||||| ||||
Sbjct 140 GATATTCAAAATCCTTTATTTTCCATACATCCTTCAGCTGAAATACCCTCAAAATATCCC 199
Query 121 TTTATGGGTATAAATTCTTTCCCAAACACAAATGTTTTTGAGGGATTTCAATATAACATA 180
||||||||||| | ||||| ||||||||| ||||||||||||| |||||||||||| |||
Sbjct 200 TTTATGGGTATCACTTCTTGCCCAAACACCAATGTTTTTGAGGAATTTCAATATAAAATA 259
Query 181 ACCAACGATCTAGAA-TTTCCAATGACCTATAACACCCAATTTCCTGTAACATCTGAAGG 239
|||||||||| | || ||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 260 ACCAACGATC-AAAACTTTCCAACGACCTATAACACCCCATTCCCTGTAATATCTGAAGG 318
Query 240 TATATCATACAATATGCATGATTTTCAGGAGAATACTATGTGTGGTTATACTGCTCACAA 299
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 319 TATATCATACAATATGCATGATGTTCAAGAGAATACTATGTGTGGTTATACTGCTCACAA 378
Query 300 TCAAGGGCTTATCATTGGTTGTCACGAGCCAGTTCATG---ATG---TGGTTGAGTCTCA 353
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 379 TCAAGGGCTTATCATTGGTTGTCACGAGCCAGTTCTTGTTCATGCCGTGGTTGAGTCTCA 438
Query 354 GCAATTTAATGTCTCAAAGTCAGAGGGTATCAATTTAATATCTCAGAGTAAGAGGGTCAC 413
||||||||||||| || ||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 439 GCAATTTAATGTCCCACAGTCAGAGGATATCAATTTAGTATCTCAGAGTGAGAGGGTCAC 498
Query 414 AAAAGAGACC--A-T-T--AACAGGCG-TCAAGATAAGAAGAAAGACATTATTATCAAAG 466
| |||| | | | | || | || ||| ||||||||||||||||||| |||||
Sbjct 499 AGAAGATAAGGTAATGTTCAAAAC-CGATCA---TAAGAAGAAAGACATTATTGGCAAAG 554
Query 467 GGCAATGGACTGCTACTGAAGACGAGATGTTGGTGAAAATGGTGAAACGTAATGGAATAA 526
||||||||||| |||||||||||||| ||||||||| |||||||||| |||| |||| |
Sbjct 555 GGCAATGGACTCCTACTGAAGACGAGTTGTTGGTGAGAATGGTGAAAAGTAAAGGAACGA 614
Query 527 AAAATTGGACATCAATCGCAAAAATGTTCCAAGGACGAGTAGGTAAACAATGGC-A---- 581
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 615 AAAACTGGACATCAATCGCAAAAATGTTCCAAGGACGAGTAGGAAAACAATGTCGAGAGA 674
Query 582 -----CA-A-CCATCTTGGTCCGGACATCaaaaaaaaTTTAT-GGAGTGAAGAAGAAGAT 633
|| | ||||||| | || ||||||| |||||| || |||||||||||||||||
Sbjct 675 GGTGGCATAACCATCTTCGACCAAACATCAAGAAAAATG-ATTGGAGTGAAGAAGAAGAT 733
Query 634 CGAATACTTATTGAAGTCCACAAGATAATAGGCAATAAATGGACCGAAATTGCTAAAAGA 693
| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 734 CAAATACTTATTGAAGTCCACAAGATAGTTGGCAACAAATGGACCGAAATTGCTAAAAGA 793
Query 694 CTCCCTGGACGAAGTGAAAATATT 717
|| |||||||||||||||||||||
Sbjct 794 CTTCCTGGACGAAGTGAAAATATT 817
Score = 265 bits (143), Expect = 7e-70
Identities = 190/212 (90%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 770 TGAACAGAGAAGTTGATTCTATAACTACAAACTCAGAAATTG-TCACTACCAAATGTGAG 828
|||||||||||||||||||||||||| ||||||| ||||||| | | ||||| |||||||
Sbjct 951 TGAACAGAGAAGTTGATTCTATAACTGCAAACTCGGAAATTGAT-AGTACCAGATGTGAG 1009
Query 829 AATATTGTTGATGAGGTGATGACTTTGAATATGGATGCTACAACGTGCTTTTATGTTCCA 888
||||||||||| |||||||||| | ||||| || | |||||||||| | ||||||||||
Sbjct 1010 AATATTGTTGACGAGGTGATGAATCTGAATCTGCACGCTACAACGTCCGTTTATGTTCCG 1069
Query 889 GAGCAAGCA-TCTTTGACATGGGGTTATGATTTTACAAAAT-TTCATGAACCCATAGATG 946
||||||||| | || |||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 1070 GAGCAAGCAGTGTT-GACATGGGGTTATGATTTTACAAAATGTT-ATGAACCCATGGATG 1127
Query 947 ATACATGGATGCTCATGACTGGTTGGAATTAA 978
|||||||||||||||||| |||||||||||||
Sbjct 1128 ATACATGGATGCTCATGAATGGTTGGAATTAA 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5