BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330483
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40230.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1805 0.0
AT5G40240.2 | Symbols: | nodulin MtN21 /EamA-like transporter ... 981 0.0
AT4G15540.1 | Symbols: | EamA-like transporter family | chr4:8... 507 1e-142
AT5G40212.1 | Symbols: | Pseudogene of AT5G40240; nodulin MtN2... 263 3e-69
> AT5G40230.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:16079648-16081735 REVERSE LENGTH=1279
Length=1279
Score = 1805 bits (977), Expect = 0.0
Identities = 1063/1104 (96%), Gaps = 7/1104 (1%)
Strand=Plus/Plus
Query 1 ATGACAAGAGGAGCAGGAGAGGAGACAGTGGCATGGAGTTACTATTGCAGAGATGTTGTG 60
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGACAAGAGGAGCAGGAGGGGAGACAGTGGCATGGAGTTACTTTTGCAGAGATGTTGTG 60
Query 61 CCGTTCACTGCAATGGTCGCGGTGGAGTGTGTCACGGTTGGATCTAATACACTGTTCAAG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CCGTTCACTGCAATGGTCGCGGTGGAGTGTGTTACGGTTGGATCTAATACACTGTTCAAG 120
Query 121 GCTGCGACATTGAGAGGATTAAGCTTTTATGTCTTTGTCTTCTATACCTATGTTGGTGCT 180
|||||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 121 GCTGCGACATTGCGAGGATTGAGCTTCTATGTCTTTGTCTTCTATACCTATGTTGTTGCT 180
Query 181 ACACTTGTTCTTCTTCCACTTTCCCTCATCTTTGGAAGGTCAAAAAGATTACCTTCAGCC 240
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 181 ACACTTGTTCTTCTTCCACTTTCCCTCATTTTTGGAAGGTCAAAACGATTACCTTCTGCC 240
Query 241 AAAACCCCTGTCTTCTTCAATATTTTCTTACTTGCGCTTGTCGGGTTCATGTCACTGATA 300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 AAGACCCCTGTCTTCTTCAATATTTTCTTACTTGCGCTTGTTGGGTTCATGTCTCTGATA 300
Query 301 GTTGGTTGTAAAGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTGGTTGTAAAGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTG 360
Query 361 ACGCCAGCTTTCACATTCACCCTCGCCGTTATCTTCAGGATGGAACAAGTAGTCTTAAGG 420
|| |||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||
Sbjct 361 ACACCAGCTTTCACATTTACGCTCGCCGTTATCTTCAGAATGGAACAAATAGTCTTAAGG 420
Query 421 AGCTCCGCGACTCAGGCTAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTT 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCTCCGCGACTCAGGCCAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTT 480
Query 481 GTTGTTCTTTATAAAGGCCCTAAAGTTCTAACTGATGCAACTCTTACACCTCCATCACCT 540
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 GTTATTCTTTATAAAGGCCCTAAAGTTCTAACTGATGCATCTCTTACACCTCCATCACCT 540
Query 541 ACCATTTCGCTTTACCAGCATTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTT 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ACCATTTCGCTTTACCAGCATTTGACTTCATTTGATTCGAGTTGGATAATCGGAGGTCTT 600
Query 601 TTGCTCGCTACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGCTCGCTACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATG 660
Query 661 GAGTTATACCCTGAAGAAATAACTGTAGTATTCTTGTACAACTTATGCGC-AGCACTAAT 719
|||||||||||||||||||||||||||||||||||||| ||||||||||| | | || ||
Sbjct 661 GAGTTATACCCTGAAGAAATAACTGTAGTATTCTTGTATAACTTATGCGCTA-CGCTTAT 719
Query 720 CTCGGCACCAGTATGTCTATTTGCGGAAAAAGACTTGACAT-CTTTTATACTTAAACCGG 778
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 720 CTCGGCACCAGTATGTCTATTTGCGGAAAAAGACTTGA-ATTCTTTTATACTTAAACCGG 778
Query 779 GTGTCTCCCTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTGTCTCCCTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTA 838
Query 839 TACACACATGGGGTCTGCATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGT 898
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 TACACACTTGGGGTCTGCATCTTAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGT 898
Query 899 CTATTGTCATTGCGGTCGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGA 958
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 899 CTATTGTCATTGCGGTCGCTATGGGTGTTATGTTCCTCGGCGATGCACTTTACCTTGGGA 958
Query 959 GTGTCATTGGATCAGTGATTCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAA 1018
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTGTCATTGGATCATTGATTTTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAA 1018
Query 1019 GAGAGGATTCAACCAAAACTGTGGCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTTCAC 1078
|||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1019 GAGAGGATTCAATCAAAACTGTGGCTGGTACTGAGCAG---TCCCCTTTGTTGCCTTCAC 1075
Query 1079 ACACCATAGAAGATGAAGCCTCAT 1102
||||||||||||| ||||||||||
Sbjct 1076 ACACCATAGAAGAAGAAGCCTCAT 1099
> AT5G40240.2 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:16082125-16084810 REVERSE LENGTH=1349
Length=1349
Score = 981 bits (531), Expect = 0.0
Identities = 914/1098 (83%), Gaps = 29/1098 (3%)
Strand=Plus/Plus
Query 15 AGGAGAGGAGACAGTGGCATGG-AGTTACTATT-GCAGAGATGTTGTGCCGTTCACTGCA 72
|||||| |||| |||||| ||| || |||| || |||||||||||||||||| ||||
Sbjct 54 AGGAGAAGAGAAAGTGGCGTGGAAG-TACT-TTACCAGAGATGTTGTGCCGTTTGCTGCG 111
Query 73 ATGGTCGCGGTGGAGTGTGTCACGGTTGGATCTAATACACTGTTCAAGGCTGCGACATTG 132
||| | ||||||||||||| ||| ||||| || || || ||||| |||||||| || ||
Sbjct 112 ATGTTTGCGGTGGAGTGTGCCACTGTTGGGTCAAACACGCTGTTTAAGGCTGCTACTTTA 171
Query 133 AGAGGATTAAGCTTTTATGTCTTTGTCTTCTA-TACCTATGTTGGTGCTACACTTGTTCT 191
|||||||| ||||| ||||||||||||||||| | | ||| ||| | | |||||| | ||
Sbjct 172 AGAGGATTGAGCTTCTATGTCTTTGTCTTCTACT-CTTATATTGTTTCAACACTTCTCCT 230
Query 192 TCTTCCACTTTCCCTCATCTTTGGAAGGTCAAAAAGATTACCTTCAGCCAAAACCCCTGT 251
|||||||||||| | |||||||||||||||| ||||||||| |||| || | ||| |
Sbjct 231 TCTTCCACTTTCTGTAATCTTTGGAAGGTCAAGAAGATTACCAGCAGCTAAGTCTCCTCT 290
Query 252 CTTCTTCAATATTTTCTTACTTGCGCTTGTCGGGTTCATGTCACTGATAGTTGGTTGTAA 311
|||||||| ||||||||||||| |||||| ||||||||||| | ||| | |||||||||
Sbjct 291 TTTCTTCAAGATTTTCTTACTTGGGCTTGTTGGGTTCATGTCGCAGATTGCTGGTTGTAA 350
Query 312 AGGTATAGAATATAGTTCACCAACTCTTGCCTCTGCTATCAGCAATCTGACGCCAGCTTT 371
|||||| | ||| ||||| ||||||||||| ||||||||||||||||| || || |||||
Sbjct 351 AGGTATTGCATACAGTTCCCCAACTCTTGCATCTGCTATCAGCAATCTCACACCGGCTTT 410
Query 372 CACATTCACCCTCGCCGTTATCTTCAGGATGGAACAAGT-AGTCTTAAGGAGCTCCGCGA 430
||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 411 CACATTCACACTCGCTGTTATCTTCAGGATGGAGCAAGTAAG-GTTAAGGAGCTCTGCGA 469
Query 431 CTCAGGCTAAAATCATTGGCACGATAGTATCTATATCTGGTGCTTTGGTTGTTGTTCTTT 490
||||||||||||||||||| | ||| ||||||||||||||||| |||| ||||| || |
Sbjct 470 CTCAGGCTAAAATCATTGGTGCAATACTATCTATATCTGGTGCTCTGGTAGTTGTGCTGT 529
Query 491 ATAAAGGCCCTA-AAGTTCT-AACTGATGCAACTCTTACACCTCCATCACCTACCATTTC 548
|||||||||| | ||||||| || |||| || ||||| || || ||||||| || |
Sbjct 530 ATAAAGGCCC-ACAAGTTCTCGCCT-CTGCATCTTTTACAACTGTATTACCTACCGTTAC 587
Query 549 GCTTTACCAGCATTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGC 608
||| ||||||| ||||| || | || || || |||||||||||||| || ||||| ||
Sbjct 588 ACTTCACCAGCAGTTGACCTCAATAGAGTCAAGCTGGATAATCGGAGGGCTCTTGCTTGC 647
Query 609 TACACAGTATTTGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGA-GTTAT 667
| |||||||||| ||| | || ||||||||||||||||||||||| |||||||| ||| |
Sbjct 648 TTCACAGTATTTTCTTATATCCGTCTGGTATATTCTTCAGACTCGTGTCATGGAGGTT-T 706
Query 668 ACCCTGAAGAAATAACTGTAGTATTCTTGTACAACTTATGCGCAGCACTAATCTCGGCAC 727
|||||||||| ||||| ||||| ||||| ||||| |||| ||| |||||||||| | ||
Sbjct 707 ACCCTGAAGAGATAACCGTAGTCTTCTTCTACAATTTATTTGCAACACTAATCTCAGTAC 766
Query 728 CAGTATGTCTATTTGCGGA-AAAAGACTTGACATCTTTTATACTTAAACCGGGTGTCTCC 786
|||||||||| |||||||| | | ||||||| |||| | |||||||| | | |||
Sbjct 767 CAGTATGTCTTTTTGCGGAGAGCA-ACTTGACTTCTTGGGTGCTTAAACCAGACATTTCC 825
Query 787 CTTGCTTCAGTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAG-TTATACACAC 845
|| ||| || |||| |||||||||| ||| ||||||| ||| || | | ||| |||||
Sbjct 826 CTCGCTGCAATCATATACTCGGGAGTCTTCGTTTCATTATTCAGCGC-GCTTACCCACAC 884
Query 846 ATGGGGTCTGCATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGT 905
|||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||
Sbjct 885 ATGGGGTCTGCATCTGAAGGGTCCGGTATACATATCCTTGTTCAGGCCATTGTCTATTG- 943
Query 906 C-ATTGCGGTCGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCA 964
| ||||| ||||| ||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 944 CGATTGCAGTCGCCATGGGTGCTATATTCCTCGGCGATGCACTTCACCTTGGGAGTGTCA 1003
Query 965 TTGGATCAGTGAT-TCTGAGC-TTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGA 1022
|||||||| |||| | || || || ||||||||||||||||||||||| |||||||||||
Sbjct 1004 TTGGATCAATGATAT-TGTGCATT-GGATTCTACACTGTGATTTGGGGCAAAGCAAGAGA 1061
Query 1023 GGATTCAACCAAAACTGTGGCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTT-CACACA 1081
|||| ||| ||||||||| |||| | |||||||| || |||||| ||| || |||| |
Sbjct 1062 GGATACAATCAAAACTGTAGCTGGTTCTGAGCAG---TCACCTTTGCTGC-TTACACATA 1117
Query 1082 CCATAGAAGATGAAGCCT 1099
||||||||||| |||||
Sbjct 1118 TCATAGAAGATGGAGCCT 1135
> AT4G15540.1 | Symbols: | EamA-like transporter family | chr4:8873355-8875344
FORWARD LENGTH=1241
Length=1241
Score = 507 bits (274), Expect = 1e-142
Identities = 455/540 (84%), Gaps = 22/540 (4%)
Strand=Plus/Plus
Query 561 TTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGCTAC-ACAGTATT 619
||| ||||| || || || ||||||||||| ||||| |||||||||| | | |||| ||
Sbjct 550 TTT-ACTTCATTCGAGTCAAGTTGGATAATTGGAGGCCTTTTGCTCGGT-CTGCAGTTTT 607
Query 620 TGCTTGTTTCAGTCTGGTATATTCTTCAGACTCGGGTCATGGAGTTATACCCTGAAGAAA 679
||||| |||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 608 TGCTTCTTTCAGTCTGGTTTATTCTTCAGACTCATATCATGGAGATATACCCTGAAGAAA 667
Query 680 TAACTGTAGTATTCTTG-TACAACTTATGCGCAGCACTAATCTC-GGCACCAGTATGTCT 737
|| | ||||| ||| || ||||||||||||||| | |||||||| || | ||||||||||
Sbjct 668 TAGCCGTAGTCTTC-TGCTACAACTTATGCGCAACTCTAATCTCAGGGA-CAGTATGTCT 725
Query 738 ATTTGCGGAAAAAGACTTGACA-TCTTTTATA-CTTAAACCGGGTGTCTCCCTTGCTTCA 795
| ||| ||||||||||||| | || || | |||||||| ||| ||||||| ||||||
Sbjct 726 ACTTGTAGAAAAAGACTTGA-ATTC-TTGGCAGCTTAAACCAGGTTTCTCCCTCGCTTCA 783
Query 796 GTCATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTATACACACATGGGGTCTG 855
||||| ||||||||| ||| | | ||||||| ||||||||||| ||||||||||||||
Sbjct 784 GTCATATACTCGGGACTCTTTGATACATCATTGGGCTCAGTTATCCACACATGGGGTCTC 843
Query 856 CATCTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTCA-TTGCGGT 914
||| ||||||||||||||||||||||||||||||||||| ||||||| | || |||| ||
Sbjct 844 CATGTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGCTGTCTATCG-CAATTGCAGT 902
Query 915 CGCTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCATTGGATCAGT 974
||| |||| || ||||||||||||||| ||||| | ||| ||||||| |||||||||||
Sbjct 903 CGCCATGGCTGCTATATTCCTCGGCGACACACTTCATCTTGGGAGTGTGATTGGATCAGT 962
Query 975 GAT-TCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATTCAACCA 1033
||| | ||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 963 GATAT-TGAGCTTTGGGTTTTACACTGTGATTTGGGGCAAAGCAAGAGAGGATTCAACCA 1021
Query 1034 AAACTGTG-GCTGATACTGAGCAGCAGTCCCCTTTGTTGCCTTCACAC-ACCATAGAAGA 1091
|||| || | |||| ||||||| | || | ||| |||||||||||| || | ||||||
Sbjct 1022 AAACAGTAAG-TGATTCTGAGCA--A-TCACTTTTATTGCCTTCACACGAC-AGAGAAGA 1076
> AT5G40212.1 | Symbols: | Pseudogene of AT5G40240; nodulin MtN21
family protein | chr5:16076674-16078037 REVERSE LENGTH=704
Length=704
Score = 263 bits (142), Expect = 3e-69
Identities = 376/481 (78%), Gaps = 47/481 (10%)
Strand=Plus/Plus
Query 561 TTTGACTTCGTTTGATTCGAGTTGGATAATCGGAGGTCTTTTGCTCGCTACACAGTATTT 620
||| ||||| || || || ||||||||||| ||||| |||||| || || ||||||||||
Sbjct 225 TTTTACTTCATTCGAGTCAAGTTGGATAATTGGAGGCCTTTTGATCACTTCACAGTATTT 284
Query 621 GCTTGTTTCAGTCTGGTATATTCTTCAGACT-CGGGTCATGGAGTTATACCCTGAAGAAA 679
|||||||||||||||||||||||||||| | | | |||||||| | |||||||||||||
Sbjct 285 GCTTGTTTCAGTCTGGTATATTCTTCAGG-TACAG-TCATGGAGATCTACCCTGAAGAAA 342
Query 680 TAACTGTAGTATTCTTGTACAACTTATGCGCAGCACTAATCTCGGCACCAGTATGTCTAT 739
|||||||||| ||||| ||||||||||| | | ||||| || ||||||| || | |
Sbjct 343 TAACTGTAGTCTTCTTCTACAACTTATGTGGAATGCTAATTTCACCACCAGTTTG-C-A- 399
Query 740 TTGCGGAAAAAGACTTGACATCTTTT-ATACTTAAACCGGGTGTCTCCCTTGCTTCAGTC 798
| ||||||||||||| |||| | |||||||||| | | ||| | ||| |||||
Sbjct 400 --G---AAAAAGACTTGACCTCTTGGCAG-CTTAAACCGGATATTTCC-TCGCTGCAGTC 452
Query 799 ATGTACTCGGGAGGCTTAGTTTCATCATTTGGCTCAGTTATACACACATGGGGTCTGCAT 858
|| |||||| | | || | | ||||||||||||||||| ||
Sbjct 453 ATATACTCG------T------C-------GG-T---T-ATACACACATGGGGTCTCCAC 488
Query 859 CTGAAGGGTCCAGTCTACATATCCTTGTTCAAGCCGTTGTCTATTGTCA-TTGCGGTCG- 916
||||| |||||||| || ||||||| ||||||||||||| ||| | || |||| ||||
Sbjct 489 CTGAATGGTCCAGTGTATGTATCCTTATTCAAGCCGTTGTTTATAG-CAGTTGCAGTCGT 547
Query 917 CTATGGGTGTTATATTCCTCGGCGATGCACTTTACCTTAGGAGTGTCATTGGATCAGTGA 976
| ||||||| ||||||||| |||||||||||| ||||||| ||| ||||||||| |||
Sbjct 548 C-ATGGGTGCTATATTCCTTGGCGATGCACTTCACCTTAGT-GTG--ATTGGATCAATGA 603
Query 977 T-TCTGAGCTTAGGATTCTACACTGTGATTTGGGGAAAAGCAAGAGAGGATTCAACCAAA 1035
| | ||||||| || || || |||||||||||||| ||||||||||| ||| || |||||
Sbjct 604 TAT-TGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAAGCAAGAGAAGATGCAGCCAAA 662
Query 1036 A 1036
|
Sbjct 663 A 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5