BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330484
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40210.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1561 0.0
> AT5G40210.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:16073620-16076117 REVERSE LENGTH=1154
Length=1154
Score = 1561 bits (845), Expect = 0.0
Identities = 952/1005 (95%), Gaps = 2/1005 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCACGGAAGGCTATGTAACAGGGACGGCTTGATCTTGACGGCGATGGTGGCGACA 60
|||||||| |||||| |||||||||| || |||| |||||||||||||||||||| ||||
Sbjct 30 ATGGTTCATGGAAGGTTATGTAACAGAGATGGCTGGATCTTGACGGCGATGGTGGTGACA 89
Query 61 GAGTTTTCTAACGTCGGAGTAAACACTCTGGTCAAAGCAGCGACTTCCAATGGACTTAGT 120
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 90 GAGTTTTCTAACGTAGGAGTAAACACTCTGGTCAAAGCAGCGACGTCCAAAGGACTTAGC 149
Query 121 CCATTCGTGGTTCTCGTATACTCTTACACATTTGGAtctcttcttcttcttcctcttacc 180
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 150 CCATTTGTGGTTCTTGTATACTCTTACACTTTTGGATCTCTTCTTCTTCTTCCTCTTACA 209
Query 181 ttcttctccttcAGATCAAGATCTCTCCCTCCGTTGACGTTTTCAATTCTATGCAACATG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 210 TTCTTCTCCTTCAGATCAAGATCTCTCCCTCCGTTGACATTTTCAATTCTATGCAACATG 269
Query 241 GGGATTCTTGGTCTAATTGTAAGTGCGTCTCAAATCTTAGGCTACAATGGGATAAAATAT 300
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 270 GGGATTCTTGGTCTAATTGCAAGTGCGTTTCAAATCTTAGGCTACAATGGGATAAAATAT 329
Query 301 AGCTCGCCGACTTTATCTTCGGCCATGAGCAATGTCAATCCTGCTTTTACCTTCATCCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 AGCTCGCCGACTTTATCTTCGGCCATGAGCAATGTCAATCCTGCTTTTACCTTCATCCTC 389
Query 361 GCCGCTGTTTTCCGCATGGAGAATATATCTCTAAGGAAAAAGAGTCGTGTAGCCAAAGTG 420
|||| |||||| || ||||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 390 GCCGTTGTTTTTCGAATGGAAAATATATCTCTAGGGAAAAAGAGTAGTGTAGCCAAAGTG 449
Query 421 TTGGGAACAATATTGTCAATAATAGGTGCACTTGTTGTGACTCTCTACCACGGTCCAATG 480
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 450 TTGGGAACAATATTGTCAATAATAGGTGCACTTGTGGTTACTCTCTACCACGGTCCAATG 509
Query 481 TTAATGTCTTCACATTCGGATTGGATCATCGGTGGCGGCCTTCTTGCTCTCCAATACATC 540
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 510 CTAATGTCTTCACATTCGGATTGGATCATCGGTGGTGGCCTTCTTGCTCTCCAATACATC 569
Query 541 CTTGTCTCCGTCTCTTACCTTGTTATGGCTCACACAATGGGTCGATATCCATCTGCGGTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 570 CTTGTCTCCGTCTCTTACCTTGTTATGGCTCACACAATGGGTCGATATCCATCTGCCGTC 629
Query 601 GTTGTGACGCTGGTGCACAATGTTTGCATCGCTGTTGTGTCTGCATTCGTGAGTCTTTTG 660
||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| ||||||
Sbjct 630 GTTGTGACGCTTGTGCACAATGTTTGCATAGCTGTTGTGTGTGCATTTGTGAGCCTTTTG 689
Query 661 GCAGAGAAGGATAATCCGAAGGCATGGGTCATAAGATTTGACATAACCTTAATTACCGTA 720
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 690 GCAGAGAAGGACAATCCGAAGGCATGGGTCATAAGATTCGACATAACCTTAATTACCGTA 749
Query 721 GTAGCAACGGGGATTTT-AAGTTCAGGATATTATGTTATACATACGTGGGCAGTGAGTCA 779
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 750 GTAGCAACGGGGATTTTGAA-TTCGGGATATTATGTTATACATACGTGGGCAGTGAGTCA 808
Query 780 TAAGGGACCTGTGTATTTGTCGATGTTCAAACCGTTATCTATATTGATTGCAGCCGTATC 839
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 809 CAAGGGACCTGTGTATTTGTCTATGTTCAAACCGTTATCTATATTGATAGCAGCCGTATC 868
Query 840 AACTTTCATTTTCCTCGGCGAGTCGCTCTATCTTGGAAGTGTGATGGGAGGAATATTGAT 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 869 AACTTTCATTTTCCTCGGCGAGTCGCTCTACCTTGGAAGTGTGATGGGAGGAATATTGAT 928
Query 900 ATCAATAGGGTTTTACATGGGGTTATGGGGTAAAGCCAAAGAAGACAAAGTTGCCATATT 959
||||||||| |||||||||| ||| |||||||||||||| ||||||||||||| |||| |
Sbjct 929 ATCAATAGGATTTTACATGGTGTTGTGGGGTAAAGCCAAGGAAGACAAAGTTGACATAAT 988
Query 960 AGGAACCATAGAGTCGTCTCCTTCACATAAAGCTCCCCTCTTGGA 1004
|||| | |||||||| |||||||||||||| ||||| ||||||||
Sbjct 989 AGGAGCAATAGAGTCCTCTCCTTCACATAATGCTCCTCTCTTGGA 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5