BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330485

Length=1173
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28150.1 | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22 |...   226    4e-58
  AT5G40180.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   213    3e-54


> AT3G28150.1 | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22 
| chr3:10471842-10473754 REVERSE LENGTH=1382
Length=1382

 Score =  226 bits (122),  Expect = 4e-58
 Identities = 225/275 (82%), Gaps = 6/275 (2%)
 Strand=Plus/Plus

Query  202  TGTGACTTG-TCTAAAGGACAATGGATTCGAGACGAAAGAGGGTCGCTGTACTCAAACTC  260
            ||||| ||| || || ||||| ||| ||| |||| ||||||| ||  | ||| |||||||
Sbjct  227  TGTGATTTGTTC-AAGGGACATTGGGTTCCAGACAAAAGAGGATCTTTATACACAAACTC  285

Query  261  TACCTGTCCTACAATACCCGACTCGAAAAACTGCTTAAAACATGGGAGACCAAACACAGA  320
             | |||| |||| || ||||||||||| |||||| ||||||| ||||||||  ||| |||
Sbjct  286  GAGCTGTGCTACGATTCCCGACTCGAAGAACTGCATAAAACAAGGGAGACCCGACAAAGA  345

Query  321  TTTCTTGTTCTGGAGATGGAAACCCGAAGGATGTGAACTTCCGAGATTCAATCCCAAAG-  379
            ||||||||||||||||||||||||||| || || || |||||||| || ||||| |||| 
Sbjct  346  TTTCTTGTTCTGGAGATGGAAACCCGATGGTTGCGATCTTCCGAGGTTTAATCC-AAAGG  404

Query  380  CTTTTCTC-GAACTTGTTCGCGGCAAAAAGATGAATTTCATTGGTGATTCAGTAGCCAGA  438
            | |||||| | | | ||||| || || ||||||||||| ||||||||||| || || || 
Sbjct  405  CGTTTCTCAGTA-TGGTTCGAGGGAAGAAGATGAATTTTATTGGTGATTCTGTGGCTAGG  463

Query  439  AACCACATGGAGTCTCTTCTCTGCCTCTTGTCAAT  473
            ||||| ||||| |||||||| ||| | ||||||||
Sbjct  464  AACCATATGGAATCTCTTCTTTGCTTGTTGTCAAT  498


> AT5G40180.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: TRICHOME BIREFRINGENCE-LIKE 22 (TAIR:AT3G28150.1); 
Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16067923-16068206 
FORWARD LENGTH=195
Length=195

 Score =  213 bits (115),  Expect = 3e-54
 Identities = 158/178 (89%), Gaps = 5/178 (3%)
 Strand=Plus/Plus

Query  409  ATGAATTTCATTGGTGATTCAGTAGCCAGAAACCACATGGAGTCTCTTCTCTGCCTCTTG  468
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  1    ATGAATTTCATTGGTGATTCTGTAGCCAGAAACCACATGGAGTCTCTTCTCTGCCTCCTG  60

Query  469  TCAATTCATGA--CTTC-ACTC-TATCTACCTCATGGACTAAGTTTCTAGTGGCGGGATT  524
            |||||  | ||  || | |    |||||||||||||| | |||||||||||||| ||| |
Sbjct  61   TCAATGGAAGAAACTCCGAAAGATATCTACCTCATGG-CAAAGTTTCTAGTGGCCGGACT  119

Query  525  CGAGAGGACTCATGCTAACAAGACCGGAACAGGAATTTATGATCTCGACATTGACAAG  582
            ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  120  CGAAAGGACTCATGCTAAGAAGACCGGAACAGGAATCTATGATCTCGACATTGACAAG  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57580025115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5