BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330506
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39960.1 | Symbols: | GTP binding;GTP binding | chr5:159940... 2892 0.0
> AT5G39960.1 | Symbols: | GTP binding;GTP binding | chr5:15994021-15997058
FORWARD LENGTH=2278
Length=2278
Score = 2892 bits (1566), Expect = 0.0
Identities = 1786/1887 (95%), Gaps = 36/1887 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCAGTCACTGGTTCGAGCAATCTCAGCTCGGAAGAATCAATTCAGTCTTAAGTTT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 175 ATGTCTCAGTCACTGGTTCGAGCAATCTCAGCTCGGAAGAATCAATTCAGTCTTGTTTTT 234
Query 61 TACTATAGATGTGTTTATTCTAAGCAATTTCATTCCCAAGATCAGATCATTGC-TCCTAA 119
|||||||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||| ||
Sbjct 235 TACTATAGATGTCTTTATTCTAAGCTATTGCATTCCCAAGATCAGATTATTGCTTCC-AA 293
Query 120 TTGCTTCAATTTTTCATCTTTAGGATTTACTTCAAGTGTTAGACATGGAAGTCATCAGAA 179
||||| ||||||||||||||||||||| | ||||| |||||||||| |||||||||||
Sbjct 294 TTGCTCCAATTTTTCATCTTTAGGATTCAATTCAACTGTTAGACATAGAAGTCATCAG-- 351
Query 180 TAGTTATAGGTTTTGTGGTAATTTGATCCCAGACTTGAATCTTGCTTGCTTAGTTCGACC 239
| ||||||||||| ||||||||||| |||||||||| | | |||||||| |
Sbjct 352 -A---ATAGGTTTTGTAGTAATTTGATCTCAGACTTGAA-------T-C-TAGTTCGATC 398
Query 240 CTCAAATGGATTTGCCACGGTTTCTGATGAATCAAATGTTGACAATGGTGAGAAACTTGT 299
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 CACAAATGGGTTTGCCACGGTTTCTGATGAATCAAATGTTGACAATGGTGAGAAACTTGT 458
Query 300 GGATAAGAAGCCAAAGGTTGTTTACAAGAAACCAATTGATTTCACCAAAATAGATGCCAA 359
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GGATAAGAAGCCAAAGATTTTTTACAAGAAACCAATTGATTTCACCAAAATAGATGCCAA 518
Query 360 TTTACTACCTACGGTGATGCTTATGGGTC-GGCCAAATGTTGGGAAGTCTGCTTTG--T- 415
||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 519 TTTACTACCTACGGTGATGCTTATGGG-CAGGCCAAATGTTGGGAAGTCTGCTTTGTATA 577
Query 416 AT--A---A-CC---GGAGGGAGGCTCTTGTTTACAATACTCCGGATGATCATGTGACAA 466
|| | | || |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 578 ATCGATTGATCCGGAGGAGGGAGGCTCTTGTTTACAACACTCCTGATGATCATGTGACAA 637
Query 467 GGGATATAAGAGAAGGGATTGCCAAGTTAGGTGATTTGAGGTTCAATGTGTTGGACTCTG 526
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 638 GGGATATAAGAGAAGGGATTGCAAAGTTAGGTGATTTGAGGTTCAATGTGTTGGACTCTG 697
Query 527 CTGGTATAGAGACTGAGGTTTCTTCGGGTACTATTCTGGGTAGAACTACAGCAATGACGG 586
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 698 CTGGTATAGAGACTGAGGTTTCTTCGGGTACTATTCTTGGTAGAACTACAGCAATGACGG 757
Query 587 CTAATGTGCTTGCAAGGACTCAGTTTGCGGTTCTTATTATTGACGTGCGGGCTGGGTTGC 646
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 758 CTAATGTGCTTGCAAGGACTCAGTTTGCGGTTCTTATTATCGACGTGAGGGCTGGGTTGC 817
Query 647 ATCCATTAGATTTAGAGGTTGGGAAATGGTTGAGAAAGCATGCTCCTCAGATTAAACCCA 706
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 818 ATCCACTAGATTTAGAGGTTGGGAAATGGTTGAGGAAGCATGCTCCACAGATTAAGCCCA 877
Query 707 TTGTAGTTATGAATAAATCTGAATCAATTGGCTCTCTTGATGAAGTTGCTTCTGAGGCCC 766
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 878 TTGTGGTTATGAATAAATCTGAATCAATCGGCTCTCTTGATGAAGTTGCTTCAGAGGCCC 937
Query 767 TTGCACTAGGTTTTGGAGAACCTATTGCTATTTCCGCCGAGACTGGACTTGGGATGACCA 826
|||||||||||||||| || ||||| |||||||| ||||||||||||||||| |||||||
Sbjct 938 TTGCACTAGGTTTTGGCGAGCCTATAGCTATTTCAGCCGAGACTGGACTTGGTATGACCA 997
Query 827 CACTTTATGAAGTTCTCCGCCCTCTACTAGAGGATTACATGGTCGAAATGTTAAATGATA 886
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 998 CACTTTATGAAGTTCTGCGCCCTCTACTAGAGGATTACACGGTCGAAATGTTAAACGATA 1057
Query 887 TATGCAGTCAAAATGATGTTCTGAGCGATGAGAATCTCTCTGATGAAATCGACGAGTCCA 946
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1058 TAGGCAGTCAAGATGATGTTCTGACCGATGAGAATCTCTCTGATGAAATCGACGAGTCCA 1117
Query 947 AGTTGCCATTGCAGTTAGCTATCGTAGGTAAGCCTAATGTTGGGAAGTCAACATTGCTCA 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1118 AGTTGCCATTGCAGTTAGCTATCGTAGGTAAGCCTAATGTTGGGAAGTCAACCTTGCTCA 1177
Query 1007 ATGCATTGTTGGAAGAAGAGCGTGTGTTGGTGGGTCCAGAAGCTGGTCTCACCAGAGATG 1066
||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||
Sbjct 1178 ATGCATTGTTGGAAGAAGAGCGTGTATTAGTGGGTCCAGAAGCTGGCCTCACAAGAGATG 1237
Query 1067 CTGTGAGAGTTCAGTTTGAGTTTCAGGGTAGGACCGTTTATCTGGTTGATACTGCTGGGT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 CTGTGAGAGTTCAGTTTGAGTTTCAGGGTAGGACCGTTTATCTGGTTGATACTGCTGGGT 1297
Query 1127 GGTTGGAGAGAACAGAGCGAGACAAAGGACCAGCATCTTTGAGTATCATGCAATCAAGAA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 GGTTGGAGAGAACAGAGCGAGACAAAGGACCAGCATCTTTGAGTATCATGCAATCAAGAA 1357
Query 1187 AGAGTCTTATGCGGGCACATGTTATCGCGTTAGTTCTCGATGCTGAAGAGATCATAAAAG 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGAGTCTTATGCGGGCACATGTTATCGCGTTAGTTCTCGATGCTGAAGAGATCATAAAAG 1417
Query 1247 CTAAATGTAGTATGACACACTCAGAAGTAGTTATAGCTAGACGTGCTGTAGAAGAAGGAC 1306
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1418 CTAAATGTAGTATGACACATTCAGAAGTAGTTATCGCTAGACGTGCTGTAGAAGAAGGAC 1477
Query 1307 GTGGTCTAGTCGTTATTGTTAACAAAATGGATCGTCTAAGAGGTAGAGAGAACTCTGAGA 1366
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 GTGGTCTAGTCGTTATCGTTAACAAAATGGATCGTCTAAGAGGTAGAGAGAACTCTGAGA 1537
Query 1367 TGTACAAGAAGATCAAAGAAGCTGTTCCCATTGAAATTCAGACAGTTATTCCTCAGATAA 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 TGTACAAGAAGATCAAAGAAGCTGTTCCCATTGAAATTCAGACAGTTATTCCTCAGATAA 1597
Query 1427 CGGGAATACCAGTAGTGTTTATCTCTGCATTAGAGGGAAGAGGACGTATGGAAGTAATGA 1486
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CTGGAATACCAGTTGTGTTTATCTCTGCATTAGAGGGAAGAGGACGTATGGAAGTAATGA 1657
Query 1487 AAGAAGTCACTGACACATACAAGAGATGGTGTTCAAGACTTTCCACAGGCCGCCTCAATC 1546
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AAGAAGTCACTGATACATACAAGAGATGGTGTTCAAGACTTTCCACAGGCCGCCTCAATC 1717
Query 1547 GCTGGTTGCGTAAGGTTATGAGCCGACATTCTTGGAAAGACACGGCTTCACAGCCAAAGA 1606
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1718 GCTGGTTGCGTAAGGTTATGAGCCGGCATTCATGGAAAGACACGGCTTCACAGCCAAAGA 1777
Query 1607 TCAAGTT-TTTCACTCAAGTGAAAGCTCGACCACCGACTTTTGTAGCGTTTGTGAGCGGT 1665
||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1778 TCAAGTTCTTT-ACTCAAGTGAAAGCTCGACCGCCGACTTTTGTAGCGTTTGTGAGCGGT 1836
Query 1666 AAAATGCAGTTATTGGAAAGCGACATAAGGTTTTTGACTAGATCATTGAAGGAAGATTTT 1725
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1837 AAAACGCAGTTATTGGAAAGCGACATAAGGTTTCTGACTAGATCATTGAAGGAAGATTTT 1896
Query 1726 GATTTAGGCGGGACTCCAATTCGAATCATACAGCGGGTTGTTCCTCGAGCACCACCCTCT 1785
||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1897 GATTTAGGCGGGACTCCTATTCGAATCATACAGCGGGTTATTCCTCGTGCACCACCCTCC 1956
Query 1786 GGTACAGGCGGTGGTGGAAGCGGAAACAGCTCGAAGAGTCGAGTAGTGCATAGAACCACC 1845
|||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 1957 GGTACAGGTGGTGGTGGAAGCGGAAACAGCTCGA-G--TCGAGTAGTGCAAAGAACCACC 2013
Query 1846 TCAGACAAACGGACTCTCTCGGCCTAA 1872
|||||||||||||||||||||||||||
Sbjct 2014 TCAGACAAACGGACTCTCTCGGCCTAA 2040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5