BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330513
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1435 0.0
> AT5G39880.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant
structures; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28750.1); Has 25
Blast hits to 25 proteins in 3 species: Archae - 0; Bacteria
- 2; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr5:15970887-15972237
FORWARD LENGTH=1351
Length=1351
Score = 1435 bits (777), Expect = 0.0
Identities = 1002/1108 (90%), Gaps = 26/1108 (2%)
Strand=Plus/Plus
Query 1 ATGGCAAGGATCTCTCTGTTGTTCTCTTTAGCCTTTGTTCTAGCCCTCGGCTCATTGTTC 60
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 79 ATGGCAAGGATCTCTCTGTTGTTCTCATTAGCCTTTGTTTTAGCCCTCGGCTCAGTGTTC 138
Query 61 CTTTCCGTTTCCGGTCACGCTCCTCCCGTGACACCGAGAAAACCGGCATGTCCAAAAACC 120
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 139 CTTTCCGTTTCCGGTCACGCTCCTCCCGTGACACCGAGAAAATCAGCATGTCCAAAAACA 198
Query 121 GTATCTGAGCTCCAGACCTTACCTTTTGCCGAAATCACTGAGATCCTAAACCGGAAAGAG 180
||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 199 GTATCCGAACTCCAGACCTTACCTTTTACCGAAATCACTGAGATCCTAAACCGAAAAGAG 258
Query 181 CGGTTTGCCCCGAACACCCTTGAGTTCGAGGTAATGTTCTCAATGTGCAAAGGCTATGTG 240
|||| ||||||||| |||| ||||||| ||| ||||||| |||||||||||||||| |||
Sbjct 259 CGGTCTGCCCCGAAAACCCCTGAGTTCAAGGCAATGTTCACAATGTGCAAAGGCTACGTG 318
Query 241 GCATACCTTGAGAGCCTCTATAAGTTTGAGAATCCCATTGTAGATGTTTTAGGAATAGCC 300
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 319 ACATACCTCGAGAGCCTCTACAAGTTTGAGAATCCCATTGTAGATGTTTTAGGAATTGCC 378
Query 301 AAGGCCAGATACGCCTTAATGACCAAGGCAATTCTTGCTGCACAAGCTAGTGTTGGCGGT 360
||| |||||||| || | |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 379 AAGACCAGATACACCCTGATGAACAAGGCAATTCTTGCTGCGCAAGCTAGTGTTGGCGGT 438
Query 361 AAGGTCAATAAGAAAACTTCTTTAAAGCTAAAGAAAAGCTACGCTGATTTGACAAAAGGG 420
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 439 AAAGTCAATAAGAAAACTTCTTTGAAGCTAAAGAAAAGCTATGCTGATTTGACAAAAGGG 498
Query 421 TTTCTCCAGA-TTAAAGAAACGATTGTCAAGATATCAGCCAAACATGAATACAAGGCTGA 479
||||||| || |||||||||| ||||| |||||||||||||||||||| ||| |||||||
Sbjct 499 TTTCTCC-GAATTAAAGAAACTATTGTAAAGATATCAGCCAAACATGATTACCAGGCTGA 557
Query 480 TGCTAAGATCACGGCTCACGAAGCGAAAAAGCTCAATCACGCTATGATAAATTTCAAGAA 539
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 558 TGCAAAGATCACGGCTCACGAAGCGAAAAAGCTCAATCACGCTATGATAAGTTTCAAGAA 617
Query 540 TTCGATTAATGCTTTCATGAATGTGGTTAACAATCTTGAGAAGAAGAAGATGAAGAAAAT 599
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 618 TTCGATCAATGCTTTCATGAATGTTGTTAACAATCTTGAGAATAAGAAGATGAAGAAAAT 677
Query 600 AGGTCTTCACGCAAGAGCACTTGGAGAAAAACGTGATAGAGTACGAAATGCTTTCAAAAG 659
|||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||
Sbjct 678 AGGTCTTCACGCAAGAGCACTTGGAGAAAACCGTGAGAAAGTAAGAAATGCTTTCAAAAG 737
Query 660 TTTTTTCAATAAGTTTGGTGGTTATCTAGGAGGTAAAACTCATGGAAGAGAACTAACAGA 719
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 738 TTTTTTCAAGAAGTTTGGTGGTTATCTAGGAGGTAAAACTCACCGAAGAGAACTAACTGA 797
Query 720 AGCTAAATACAGCGCCAATTCTCATGTTGGTGCTGACGTCAAAGGATTTGAATCTATTTT 779
||||||||||| ||| ||||||| |||||||||||||| |||||||||||||| ||| |
Sbjct 798 AGCTAAATACAACGCGGATTCTCACGTTGGTGCTGACGTAAAAGGATTTGAATCCATTAT 857
Query 780 AGATAAATTTTCTGGCTTCTTTAGTGGTTATCTCGGAGGTCAAACTCACCGAAGAGAACT 839
||||| ||||||| |||||||| ||||||||| |||||||| | | ||||||||||
Sbjct 858 CGATAAGTTTTCTGACTTCTTTAATGGTTATCTTGGAGGTCA--C-C---GAAGAGAACT 911
Query 840 CTTTAACCAACTACCAGGCGTAGAGC-AA---GCCGATGAAAAAATTGCTATCCATGCTT 895
|||| ||||| |||||| | || || || |||||||||||||||||||| |||||||
Sbjct 912 CTTTTACCAAGTACCAG-C--AG-GCGAATTCGCCGATGAAAAAATTGCTATTCATGCTT 967
Query 896 CTTTGG-CACAAAAAGCTCGCGGAAGAAGAGCTCAAA--GAAGAGAACTATATGCTCAAT 952
|||||| | | ||| |||| |||||||| || || |||| |||||||||||||||
Sbjct 968 CTTTGGACGCCAAA-GCTCACGGAAGAAAAGG--AATTCGAAGGGAACTATATGCTCAAG 1024
Query 953 CTCCGTTATTTAAAGATTTCTTCAATGTTGGATTTGGAGGTAAAGCTCAATATGATGCCG 1012
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1025 CTCCTTTATTTAAAAATTTCTTCAATGTTGGATTTGGAGGTAAAGCTCAATACGATGCCG 1084
Query 1013 CGGGGAAGATGAAAGTCGCCGGACAAGATGGATTCAGGGCACTGAAGAGGCCACAT-TAC 1071
|||| |||||||||||||||||| | |||||||||||| ||||||| ||| ||||| |
Sbjct 1085 CGGGAAAGATGAAAGTCGCCGGAGATGATGGATTCAGGTCACTGAACAGGGCACATGTT- 1143
Query 1072 AAACATTTTGCTTCGAC-GAAGGCATAA 1098
||||||||||||||||| |||| |||||
Sbjct 1144 AAACATTTTGCTTCGACAGAAG-CATAA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5