BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330549
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39440.1 | Symbols: SnRK1.3 | SNF1-related protein kinase 1.... 2119 0.0
AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1 k... 91.6 2e-17
> AT5G39440.1 | Symbols: SnRK1.3 | SNF1-related protein kinase
1.3 | chr5:15781907-15784699 FORWARD LENGTH=1485
Length=1485
Score = 2119 bits (1147), Expect = 0.0
Identities = 1384/1495 (93%), Gaps = 29/1495 (2%)
Strand=Plus/Plus
Query 1 ATGGATGGATCATCGGAAAAAACTACCAATAGAA-TGGTATCAATTCTACCAAATTATAA 59
||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||
Sbjct 1 ATGGATGGATCATCGGAAAAAACTACCAATA-AATTAGTATCGATTCTACCAAATTATAG 59
Query 60 GATTGGTAAAACTCTTGGGCATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGTAGC 119
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATTGGTAAGACTCTTGGACATGGATCCTTTGCGAAAGTGAAATTAGCACTGCATGTAGC 119
Query 120 TACTGGGCACAAAGTTGCTATCAAAATCCTTAATCG-TGCTAAGATTAAGAACATGGGTA 178
|||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 120 TACTGGTCACAAAGTTGCTATCAAAATTCTTAATCGCT-CTAAGATTAAGAACATGGGTA 178
Query 179 TTGAGATCAAAGTACAAAGGGAGATCAAAATTCTAAGGTTGTTGATGCATCCTCATATCA 238
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 179 TTGAGATCAAAGTACAAAGGGAGATCAAAATTCTCAGATTTTTGATGCATCCTCATATCA 238
Query 239 TCCGTCAATACGAAGTTATAGAGACGCCTGATAACATTTATGTTGTGATGGAATATGTTA 298
|||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 239 TCCGTCAATATGAAGTTATAGAGACGCCAAATGACATTTATGTTGTGATGGAATATGTTA 298
Query 299 AGTCTGGAGAATTATTTGACTATATTATAGAAAAAGGTAGATTGCAAGAAGACGAGGCTC 358
||||||||||| |||||||||||||| |||| ||||||| ||| || |||||||||||||
Sbjct 299 AGTCTGGAGAACTATTTGACTATATTGTAGAGAAAGGTAAATTACAGGAAGACGAGGCTC 358
Query 359 GTCATCTATTTCAGCAGATCATATCTGGTGTGGAGTATTGTCATCGCAATATGATCGTTC 418
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 GTCATCTTTTTCAGCAGATCATATCTGGTGTAGAGTATTGTCATCGCAATATGATCGTTC 418
Query 419 ATAGAGATCTTAAGCCTGAGAATATGCTTTTGGATTCGAAATGTAACATAAAGATTGTTG 478
|||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 419 ATAGAGATCTTAAGCCCGAGAATGTGCTTTTGGATTCGCAATGCAACATAAAGATTGTTG 478
Query 479 ACTTTGGATTGAGTAATGTCATGCATGATGGTCATTTTTTAAAGACTAGTTGTGGAAGCC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTTTGGATTGAGTAATGTCATGCATGATGGTCATTTTTTAAAGACTAGTTGTGGAAGCC 538
Query 539 CTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCATATTCTGGACCAGAAGTAGATA 598
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 539 CTAATTATGCTGCTCCAGAGGTTATTTCAGGAAAACCATAT---GGACCAGATGTAGATA 595
Query 599 TATGGAGTTGTGGGGTTATATTATATGCTCTATTGTGCGGTACTCTTCCCTTCGACGACG 658
|||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct 596 TATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCTTTCGATGACG 655
Query 659 AAAATATTCCTACTCTATTCGATAAAATAAAGAAAGGAATGTATACTCTTCCAGATCATT 718
|||||||||||| | ||||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 656 AAAATATTCCTAATGTATTCGAGAAAATAAAGAGAGGAATGTATACTCTTCCAAATCATT 715
Query 719 TATCATATGTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCCT-CTGATGAGA 777
||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 716 TATCACATTTTGCTAGAGATTTGATACCGAGAATGCTTATGGTTGATCCTACT-ATGAGA 774
Query 778 ATTAGCATTACTGAGATTCGTCAACATCATTGGTTCAATAATCATGTTCCTCTTTATCTT 837
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 775 ATTAGCATTACTGAGATTCGTCAACATCCTTGGTTCAATAATCATCTTCCTCTTTATCTT 834
Query 838 TATATGCCTCCATTAGATACAATAGAAGAAGCTAAAAAGATTGATGAGGAGATAATTCAA 897
| ||| |||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 835 TCTATTCCTCCATTAGATACCATAGACCAAGCTAAAAAGATTGAGGAGGAGATAATTCAA 894
Query 898 AAAGTAGTTAACATAGGATTTGATAGAAACCAAGTTGTTGAATCTCTTGTCAATAGAATC 957
|| || ||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||
Sbjct 895 AACGTGGTTAACATAGGGTTTGATAGAAACCATGTTGTTGATTCTCTTGCCAATAGAATC 954
Query 958 CAAAACGAGGCTACAATTGCATACCATCTAATACTAGATAACCGAAACCAAAATTTTGTT 1017
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct 955 CAAAACGAGGCTACAGTTGCATACCATCTAATCCTAGACAACCGAAACCAAAATTCTGTT 1014
Query 1018 CCTAATGACCCTTTCCAATCCAACTTTAAAGAGATATCGGGTGGTATATTTAATTCGACG 1077
|| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 1015 CCCAATGACCCTTTCCAATCCAAGTTTAAAGAGATTTCGGATGGTATATTTAATTCGACG 1074
Query 1078 TTTCCAGCTGTTCAAAATATTACTTCACATGTTGGCCATTCATTCTCGGCATTGTATGGA 1137
|| |||| | | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1075 TTACCAG-T-T-CAAAATATTACTTCACATGTTGGCCATTCATTTTCGGCATTGTATGGA 1131
Query 1138 CTAAAATCACA-TGTCAAAGATGACAAAACATGGACCCTTGGCCTTCAGTCTCAAGGGAG 1196
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 CTAAAATC-CAATGTCAAAGATGACAAAACATGGACCCTTGGACTTCAGTCTCAAGGGAG 1190
Query 1197 TCCTCATGATATAATGAATGAAATTTTTAAGGCTCTTCAAAATCTAAAAGTGTGCTGGaa 1256
|||| ||||||| |||| |||||||||||| |||||||||||||||||| | ||||||||
Sbjct 1191 TCCTTATGATATCATGACTGAAATTTTTAAAGCTCTTCAAAATCTAAAAATATGCTGGAA 1250
Query 1257 aaaaaTCGGACTCTACAATATAAAATGTAGAAGGGTCCGAAGCCTTGCTAACTACAAGAA 1316
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||||
Sbjct 1251 AAAAATCGGACTCTACAATATAAAATGTAGATGGGTCCGAAGCTTTGCTTACTATAAGAA 1310
Query 1317 TCATACAATTGAGGGTGAATGT---AT--T---A-------TCATCAAATTTGAACTTCA 1361
|||||||||||||| ||||||| || | | |||||||||||||| ||||
Sbjct 1311 TCATACAATTGAGGATGAATGTGCCATCATCTTACCGACCGTCATCAAATTTGAAATTCA 1370
Query 1362 GCTATACAAAGTACGTGAAGGCAAGTATTTGTTGGACATCCAAAGAATTGATGGACCTCA 1421
||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1371 GCTATACAAAGTACGCGAAGGCAAATATTTGCTGGACATCCTAAGAATTGATGGACCTCA 1430
Query 1422 GTTTATCTTCTTTGATATATGTGTTGCGTTTCTCAGAGAGCTAGGGGTCCTCTAA 1476
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1431 GTTTATCTTCTTTGATCTATGTGTTGCGTTTCTCAGAGAGCTAGGTGTCCTCTAA 1485
> AT3G29160.1 | Symbols: AKIN11, SNRK1.2, KIN11, ATKIN11 | SNF1
kinase homolog 11 | chr3:11128625-11132065 REVERSE LENGTH=2067
Length=2067
Score = 91.6 bits (49), Expect = 2e-17
Identities = 98/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 1343 TCATCAAATTTGAACTTCAGCTATACAAAGTACGTGAAG-GCAAGTATTTGTTGGACATC 1401
|||||||||||||||||||||||||||||| || |||| | ||||| ||| |||| ||
Sbjct 1666 TCATCAAATTTGAACTTCAGCTATACAAAGCCCGGGAAGAG-AAGTACTTGCTGGATATA 1724
Query 1402 CAAAGAATTGATGGACCTCAGTTTATCTTCTTTGATATATGTGTTGCGTTTCTCAGAGAG 1461
|| ||| || | || || |||||| ||||||| ||| |||| | || ||||| | ||||
Sbjct 1725 CAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAG 1784
Query 1462 CT 1463
||
Sbjct 1785 CT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5