BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330553
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39400.1 | Symbols: ATPTEN1, PTEN1 | Calcium/lipid-binding (... 2030 0.0
> AT5G39400.1 | Symbols: ATPTEN1, PTEN1 | Calcium/lipid-binding
(CaLB) phosphatase | chr5:15766037-15768244 FORWARD LENGTH=1697
Length=1697
Score = 2030 bits (1099), Expect = 0.0
Identities = 1194/1240 (96%), Gaps = 6/1240 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTCAAGCTCTCAAGAGGGCCTGTAAAAGAAAAATCAACTTTGGAATTTACGAGG 60
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||
Sbjct 137 ATGGGTCTCAAGCTCTCACGAGGGCCTGTAAAAGAAAAATCACCTTTGGAATTCACAAGG 196
Query 61 GTTCACATTCTAACTTACCTT-AGCACAAGTTCTTACCTACGTAGCTTGGTGTCCAAGAA 119
||||||||||| ||||| ||| | ||||| |||||||||||||| |||||||||||||||
Sbjct 197 GTTCACATTCTGACTTA-CTTCACCACAAATTCTTACCTACGTAACTTGGTGTCCAAGAA 255
Query 120 ACGAAGACGGTTAATCATCGGTGGATATGATCTCGACATGTCTTACATCTCTGACAAATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 256 ACGAAGACGGTTAATCATCGGTGGATATGATCTCGACATGTCTTACATCTCCGACAAATT 315
Query 180 ATTGGCAATGTCTTTTCCAGCTGAACGAATGAGAGCAGTTTATAGAAACCCTCTTTGGCA 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 316 ATTGGCAATGTCTTTTCCAGCTGAACGAATGAGAGCAGTCTATAGAAACCCTCTTTGGCA 375
Query 240 AGTCAAATCCGTGCTCGATATGCGACATCCTGATCATTACAAGGTCTATAATCTATGTAT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGTCAAGTCCGTGCTCGATATGCGACATCCTGATCATTACAAGGTCTATAATCTATGTAT 435
Query 300 AGAGGAATCTTATGATCCAGAAAACTTCTATGGCCGCGTGGAACGATTTCCGTTTGATGA 359
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 436 AGAGGAATCTTATGATCCAGACAACTTTTATGGCCGCGTGGAGCGATTTCCGTTTGATGA 495
Query 360 CAATCATGTTCCATCTCTCAAAATGATCCAACTTTTCTGCGAAAGTGTTCATTCTTGGCT 419
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 496 CAATCATGTTCCATCCCTCAAAATGATCCAACTTTTCTGTGAAAGTGTTCATTCTTGGCT 555
Query 420 CTCACTAGATCCCAAGAACATCGCGGTTGTTCATTGCATGGCAGGAAAAGGCAGAACAGG 479
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 556 CTCATTAGATCCCAAGAACATCGCGGTTGTTCATTGCATGGCAGGAAAAGGTAGAACAGG 615
Query 480 GTTAATGGTATCGGCGTACCTTGTTTATGGTGGAATGTCAGCTGAAGAAGCTCTTGAGAT 539
| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 616 GCTAATGGTATCGGCGTACCTTGTTTACGGTGGCATGTCAGCTGAAGAAGCTCTTGAGAT 675
Query 540 GTATGCAAGCAGAAGAACAACAAACAATAATGGAGTCTCAATACCAAGCCAACGTCGTTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GTATGCAAGCAGAAGAACAACAAACAATAATGGAGTCTCAATACCAAGCCAACGTCGTTA 735
Query 600 TGTGAAATACTGGTCAGATTTACTTTCGTTTC-GTAAAAGGGGACCTCCCGAGGTTAAAT 658
|||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 736 TGTGAAGTACTGGTCAGATTTACTTTCG-TTCAGTAAAAAAGGACCTCCCGAGGTTAAAT 794
Query 659 TACCTCAAGAACATAGCAGAGAGTTGCTT-CGAATTAGACTTTACGATACAGCCAACGTT 717
|||| ||||||||||||||||||||| || |||||||||||||| |||||||| ||||||
Sbjct 795 TACCGCAAGAACATAGCAGAGAGTTG-TTGCGAATTAGACTTTATGATACAGCTAACGTT 853
Query 718 GATTCCGTCTTCTTTGTGGTCTCGGAACTTCAGGAGGTTCCAAATGAGATGTATCGACCG 777
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 854 GATTCCGTCTTCTTTGTGGTTTCAGAACTTCAGGAGGTTCCAAATGAGATGTATCGACCG 913
Query 778 TCTGTAGAACTTGCAAGAGGTTGTTGTAGACAATTCAAGAAAGGGTATTGTAGAAGCTCG 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 914 TCTGTAGAACTTGCAAGAGGTTGTTGTAGACAATTCAAGAAAGGGTATTGTAGAAGTTCG 973
Query 838 AGTCCACGGTATTATATATCTCATGTGAACTGTGATTCAGAAGAAGATGAGGAAGTAACA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AGTCCACGGTATTATATATCTCATGTGAACTGTGATTCAGAAGAAGATGAGGAAGTAACA 1033
Query 898 GATGGAGAAGAGCCACGTCTTGTTGTTCAAATGGATACAGAGAGTTCAATTATCGACGAG 957
|| ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1034 GACGGAGAAGAGCCACATCTTGTTGTTCAGATGGATACAGAGAGTTCCATTATCGACGAA 1093
Query 958 AAAACATGTCTTGATTTCTACTTTGACAAACCTGTGAGAGTGAGTGGAGACATACGCATC 1017
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1094 AAAACTTGTCTTGATTTCTACTTTGACAAACCTGTGAGAGTTAGTGGTGACATACGCATC 1153
Query 1018 ACATTCTACCAGAAAATGATTGGAAGCCGTCTTTTTTATACTTGCTTCAACACAGCTTTT 1077
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1154 ACATTCTACCAGAAAATGATTGGAAGCCGCCTTTTTTATACTTGCTTCAACACAGCTTTT 1213
Query 1078 ATAACCAATGGCTTACTTCAGTTTTCCATAGGAGAGCTAGATAAAGTTGGTGGTAACGGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 ATAACCAATGGCTTACTTCAGTTTTCCATAGGAGAGCTAGATAAAGTTGGTGGTAACGGA 1273
Query 1138 AGATCGATATCTGGTCCTGATTTTAGCTTGGAGTTACTCTTTGGCCCAGCTTGTTCAAAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1274 AGATCGATATCTGGTCCTGATTTTAGCTTGGAGTTACTCTTTGGCCCAGCTTGTTCGAAA 1333
Query 1198 TTCGGAAAGTTTCTTTCCCGCGATGACCTTTCTCTCTCTT 1237
||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TTCGGAAAGTTTCTTTCCCGCGATGACCTTTCTCTCTCTT 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5