BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg330592 Length=1035 Score E Sequences producing significant alignments: (Bits) Value AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 545 2e-154 > AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:18389436-18390539 REVERSE LENGTH=1104 Length=1104 Score = 545 bits (295), Expect = 2e-154 Identities = 655/820 (80%), Gaps = 60/820 (7%) Strand=Plus/Plus Query 252 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCACCTGTGGAATGGTCTAATATTGTCTC 311 ||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||| | Sbjct 309 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCTCCTCTGGAATGGTCTAGCATCGTCGC 368 Query 312 TGTTGATTCTA-ATCTCTACGCCATT-A--G--CGA-CG-A-A-G-T---TG--CT---G 352 ||||| ||| | |||||||||||||| | | | | || | | | | || || | Sbjct 369 TGTTGGTTC-ACATCTCTACGCCATTAACGGACCTATCGAAGATGCTCCATGCTCTAACG 427 Query 353 TCTCTTTCCTTGACTGTCGAACTCACACTTGGCTCGAAGCTCCAAGCTTGCGATTGACTA 412 |||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || || Sbjct 428 TCTCCTTCCTTGACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGCGAGTGGCTC 487 Query 413 ACACTCAA-AG-TAAGCTTGATGGGGAGATGTATTTACCAGGAAGCTGTGAAAATCCAGA 470 |||| ||| || || ||||||||| ||||||||||| ||||||||| || ||| ||| Sbjct 488 ACAC-CAATAGCCAA-CTTGATGGGAAGATGTATTTAGCAGGAAGCTCCGAGAATGTAGA 545 Query 471 TTCTTTCAACTGTATTGAAGTTG-TCAGCAAAAAGACTCAAACTTTGAAGCCCCAGCGGC 529 |||||| ||||||||| ||| || |||||| |||||| ||||||| |||||| || | Sbjct 546 TTCTTTGAACTGTATTCAAG-TGTTCAGCACAAAGACACAAACTTGGAAGCCTGTGCCGT 604 Query 530 TCGAAAAGCCGAGT-TTAGGAGTTTTAGATCTGCAAGGAAAGGTTTACATGATC--CACG 586 || |||||| || | || ||||| ||||||| |||||||| |||| | |||| | | Sbjct 605 TCCAAAAGCGGA-TATTCGGAGTCGGAGATCTGGAAGGAAAGATTTATACGATCTGTAGG 663 Query 587 AAATCGAGTCTGGTAAAAAAGGTGTGGTTTTAAA-CTTTAAGGATTTAACTTGGGAAGTG 645 | | |||| ||| | | |||||| | |||| | ||||||||||| || || ||| Sbjct 664 ACA--GAGTGTGG---ACAGGGTGTGACTATAAAGC-CAAAGGATTTAACATGTGACGTG 717 Query 646 GTAGGATTAGGTGGGAATAATTTTTGGGCTTCTGTTGGTATGATAGAGAACATAGTCTAT 705 |||||||| ||||| | || |||| |||||||| ||||||||| ||||||||||||| Sbjct 718 GTAGGATTTTGTGGGGAGAAGGATTGGTCTTCTGTTTGTATGATAGGGAACATAGTCTAT 777 Query 706 TCTTATAATAAACGCAGTGGGGAGTTTCTGTGGTTATACT-TTGACAAGGAGGAAGAAGG 764 | || | ||| || || |||||||||||| ||| |||||| | || |||| |||| || Sbjct 778 T-TT-T-ATAGACCCAATGGGGAGTTTCTATGGATATACTCTGGAAAAGG-GGAA-TCGG 832 Query 765 -T-GCGAGGAAAT-TAAAGGGTTTAGAAGGGTTACCTAAGTTTGAT-AGTGGTAG-TACT 819 | | || ||||| |||||||||||||||||||||||||||||||| | | | | || | Sbjct 833 CTAG-GA-GAAATCTAAAGGGTTTAGAAGGGTTACCTAAGTTTGATGATTA-T-GCTAGT 888 Query 820 GTTAGATTGGTGAATTATGGTGGTAAGCTGATGGTTTTGTGGGATCAAA-ATGTTCCTGC 878 |||| ||||||| |||||||||||||| |||||||||||||||| || |||| |||| Sbjct 889 GTTAAATTGGTGGATTATGGTGGTAAGTTGATGGTTTTGTGGGA-CACTTATGTCCCTGA 947 Query 879 AAGTGACTTTGAGGAGGAGAAGATGATTTGGTGTGCCGAGATTTCGCTTGACAAAC-G-G 936 |||||| | | | ||||||||||||||||||| || |||||||||||| | ||| | | Sbjct 948 AAGTGAGTCT-A--AGGAGAAGATGATTTGGTGCGCAGAGATTTCGCTTCAAAAAAAGTG 1004 Query 937 -AAGAATGATGAGATTTGGGGCAAGGTCGAGTGGTTTGAAGCTGTGCTTACAGTCCCTAA 995 || ||||| ||||||||||| | |||||||||||| || |||||||||||||||||| | Sbjct 1005 CAACAATGAAGAGATTTGGGGGACGGTCGAGTGGTTCGACGCTGTGCTTACAGTCCCTGA 1064 Query 996 AGCTTATCAATTTGTGTGTGCTATTGCTGCTACTGTTTGA 1035 | || | |||| ||| ||||||||||||||||||||||| Sbjct 1065 GGATTGTAAATTCGTGCGTGCTATTGCTGCTACTGTTTGA 1104 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50736488470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5