BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330592
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 545 2e-154
> AT4G39600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18389436-18390539 REVERSE LENGTH=1104
Length=1104
Score = 545 bits (295), Expect = 2e-154
Identities = 655/820 (80%), Gaps = 60/820 (7%)
Strand=Plus/Plus
Query 252 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCACCTGTGGAATGGTCTAATATTGTCTC 311
||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||| |
Sbjct 309 TCTTCTGGTTCCGATCCCAATCATCAACTCTCCTCCTCTGGAATGGTCTAGCATCGTCGC 368
Query 312 TGTTGATTCTA-ATCTCTACGCCATT-A--G--CGA-CG-A-A-G-T---TG--CT---G 352
||||| ||| | |||||||||||||| | | | | || | | | | || || |
Sbjct 369 TGTTGGTTC-ACATCTCTACGCCATTAACGGACCTATCGAAGATGCTCCATGCTCTAACG 427
Query 353 TCTCTTTCCTTGACTGTCGAACTCACACTTGGCTCGAAGCTCCAAGCTTGCGATTGACTA 412
|||| ||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 428 TCTCCTTCCTTGACTGTCGATCTCACACTTGGCTCGAAGCTCCAAGCATGCGAGTGGCTC 487
Query 413 ACACTCAA-AG-TAAGCTTGATGGGGAGATGTATTTACCAGGAAGCTGTGAAAATCCAGA 470
|||| ||| || || ||||||||| ||||||||||| ||||||||| || ||| |||
Sbjct 488 ACAC-CAATAGCCAA-CTTGATGGGAAGATGTATTTAGCAGGAAGCTCCGAGAATGTAGA 545
Query 471 TTCTTTCAACTGTATTGAAGTTG-TCAGCAAAAAGACTCAAACTTTGAAGCCCCAGCGGC 529
|||||| ||||||||| ||| || |||||| |||||| ||||||| |||||| || |
Sbjct 546 TTCTTTGAACTGTATTCAAG-TGTTCAGCACAAAGACACAAACTTGGAAGCCTGTGCCGT 604
Query 530 TCGAAAAGCCGAGT-TTAGGAGTTTTAGATCTGCAAGGAAAGGTTTACATGATC--CACG 586
|| |||||| || | || ||||| ||||||| |||||||| |||| | |||| | |
Sbjct 605 TCCAAAAGCGGA-TATTCGGAGTCGGAGATCTGGAAGGAAAGATTTATACGATCTGTAGG 663
Query 587 AAATCGAGTCTGGTAAAAAAGGTGTGGTTTTAAA-CTTTAAGGATTTAACTTGGGAAGTG 645
| | |||| ||| | | |||||| | |||| | ||||||||||| || || |||
Sbjct 664 ACA--GAGTGTGG---ACAGGGTGTGACTATAAAGC-CAAAGGATTTAACATGTGACGTG 717
Query 646 GTAGGATTAGGTGGGAATAATTTTTGGGCTTCTGTTGGTATGATAGAGAACATAGTCTAT 705
|||||||| ||||| | || |||| |||||||| ||||||||| |||||||||||||
Sbjct 718 GTAGGATTTTGTGGGGAGAAGGATTGGTCTTCTGTTTGTATGATAGGGAACATAGTCTAT 777
Query 706 TCTTATAATAAACGCAGTGGGGAGTTTCTGTGGTTATACT-TTGACAAGGAGGAAGAAGG 764
| || | ||| || || |||||||||||| ||| |||||| | || |||| |||| ||
Sbjct 778 T-TT-T-ATAGACCCAATGGGGAGTTTCTATGGATATACTCTGGAAAAGG-GGAA-TCGG 832
Query 765 -T-GCGAGGAAAT-TAAAGGGTTTAGAAGGGTTACCTAAGTTTGAT-AGTGGTAG-TACT 819
| | || ||||| |||||||||||||||||||||||||||||||| | | | | || |
Sbjct 833 CTAG-GA-GAAATCTAAAGGGTTTAGAAGGGTTACCTAAGTTTGATGATTA-T-GCTAGT 888
Query 820 GTTAGATTGGTGAATTATGGTGGTAAGCTGATGGTTTTGTGGGATCAAA-ATGTTCCTGC 878
|||| ||||||| |||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 889 GTTAAATTGGTGGATTATGGTGGTAAGTTGATGGTTTTGTGGGA-CACTTATGTCCCTGA 947
Query 879 AAGTGACTTTGAGGAGGAGAAGATGATTTGGTGTGCCGAGATTTCGCTTGACAAAC-G-G 936
|||||| | | | ||||||||||||||||||| || |||||||||||| | ||| | |
Sbjct 948 AAGTGAGTCT-A--AGGAGAAGATGATTTGGTGCGCAGAGATTTCGCTTCAAAAAAAGTG 1004
Query 937 -AAGAATGATGAGATTTGGGGCAAGGTCGAGTGGTTTGAAGCTGTGCTTACAGTCCCTAA 995
|| ||||| ||||||||||| | |||||||||||| || |||||||||||||||||| |
Sbjct 1005 CAACAATGAAGAGATTTGGGGGACGGTCGAGTGGTTCGACGCTGTGCTTACAGTCCCTGA 1064
Query 996 AGCTTATCAATTTGTGTGTGCTATTGCTGCTACTGTTTGA 1035
| || | |||| ||| |||||||||||||||||||||||
Sbjct 1065 GGATTGTAAATTCGTGCGTGCTATTGCTGCTACTGTTTGA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5