BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330600
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1170 0.0
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 401 6e-111
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 198 8e-50
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 1170 bits (633), Expect = 0.0
Identities = 954/1101 (87%), Gaps = 53/1101 (5%)
Strand=Plus/Plus
Query 1 ATGTCGTCTCCGGAAAAGCTGTCGCCGGCGCCGGAATCGAACCCAAATCCGTCACTTCCC 60
|||||||| ||||||||| | ||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 ATGTCGTCCCCGGAAAAGTTTTCGCCAGCGCCGGAATCGAACTCAAATCCGTCACTTCCC 60
Query 61 GATGCGTTGCTAATAAGCTGTATCGCACGAGTCTCAAGATTGTATTATCCGACTCTCTCC 120
||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GATGCTTTGATAATAAGCTGCATCGCACGAGTCTCAAGATTGTATTATCCGATTCTCTCC 120
Query 121 CTTGTCTCCAAAAGCTTTCGATCTCTCCTAGCTTCACCGGAGCTTTACAAGGCCCGATTA 180
|||||||||| |||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 121 TTTGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCGGAGCTTTACAAGGAACGGTCA 180
Query 181 CTCTTGGACCGCACCGAGAGTTGTCTCTATGTATGCTTAAAGC-TAAGTCCTTCTGAGAA 239
|||||| ||||||||||| ||||||| |||||||||||| | | ||| ||||| |||||
Sbjct 181 CTCTTGAACCGCACCGAGGGTTGTCTATATGTATGCTTATA-CTTAAATCCTTTTGAGAG 239
Query 240 CCCTAGCTGGTTCACTCTCTGCCTGAAACCCGATGAAACCCTAACTTATGACACAAGTAA 299
|||||||||||| ||||||||| ||||||| ||| || ||||| ||| ||| ||||||||
Sbjct 240 CCCTAGCTGGTTTACTCTCTGCTTGAAACCTGATCAAGCCCTATCTTCTGAAACAAGTAA 299
Query 300 TAAGAAAAAGTCAAGTGACTATGTTTTGGCTAAAGTCCCAATTCCACATTCTCCTCCTGT 359
|||||| |||||||||| ||||||||||||| ||| ||||||||||| ||| || |||
Sbjct 300 TAAGAAGAAGTCAAGTGGGTATGTTTTGGCTACAGTATCAATTCCACATCCTCGTCTTGT 359
Query 360 GAAAAGTTCGAGTCTCGTGGTGGTTGGTTCTAATATCTACAACATTGGCTGTAATATCTA 419
| || |||| |||||||||| |||||||||| | | | | | | || | |
Sbjct 360 GCAACGTTCCAGTCTCGTGGCGGTTGGTTCT-A-A--T-----A-T--C-----TA-C-A 400
Query 420 CAGCATTGGCAGATCCAGATCACCTTACTCTAACGTTTCTATTTTTGATTGCCGGTCTCA 479
| |||||||||||||| |||||||||||||| || || ||||||||||||||||||||
Sbjct 401 -A-CATTGGCAGATCCATATCACCTTACTCTAGTGTCTCGATTTTTGATTGCCGGTCTCA 458
Query 480 CACATGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCTATTTGCAGTTTCTGCTGGCGTCGT 539
||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
Sbjct 459 CACGTGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCTAGTTGAAGTTTCTGCTGGCGTCCT 518
Query 540 TGATGGAAAGATATATGTAACCAGAAGCTGCAAAGAT-GACGATTCT-TATAACTTGAAG 597
||| ||||||||||||||| || |||| ||||||||| || |||||| | ||||||||||
Sbjct 519 TGACGGAAAGATATATGTAGCCGGAAGTTGCAAAGATGGA-GATTCTCT-TAACTTGAAG 576
Query 598 AACACTTTCGAGGTGTTCGACACAAAAACACAAGTTTGGGATCATGTGCCAAGCCCTTAC 657
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 577 AACACTTTCGAGGTGTTCGACACAAAAACACAAGTTTGGGATCATGTACCTATCCCTTAC 636
Query 658 AGCCAAACAAAACACAAC-TCTTACTCCAAAAGCCTATGTATTGACGAAAAGTGGTACGT 716
| | |||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||
Sbjct 637 AACGAAACAAAACACAACAT-TTACTCCAAAAGCTTATGTATTGACGAAAAGTGGTATGT 695
Query 717 -GGTGACTAAAAGAAAGGTGGTTGCTTACAATCCCAAGAAAGGTAAATGGGACCATGTTG 775
|| | |||| |||||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct 696 AGGGG-CTAAGAGAAAGGTGGTTTCTTACAATCCCAAGAAAGGTATATGGGACCTTGTTG 754
Query 776 AATCAGAGATGTGTAGTTACAAGTCTTCATATGGTTATTGTGTGATAGAGAACGTTTTGT 835
||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 755 AATCAGAGATGTGTAGTTATAAGTCTTCATATGATTATTGTGAGATAGAGAACGTTTTGT 814
Query 836 ACTCTGTGGAAAAAACATGGCGTGGCACTGATTTCAGATGGTATGACACTGAGCTAAGAC 895
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 815 ACTCTGTCGAAAAAACATGGCGTGGCACTGTTTTCAGATGGTATGACACTGAGCTAGGAC 874
Query 896 AGTGGAGAAAAGT-GAAGGGTTTGGAGAATATGACTTATGGTGGGTCT----A-A----- 944
||||||||| || | |||||||| | | |||| ||||| ||||| || | |
Sbjct 875 GGTGGAGAAA-GTTGGAGGGTTTG-A-A-TATGCCTTATAGTGGGACTGGTGACAGAGGC 930
Query 945 --TAAGA---TGCTCTGGTGTGCAGTGATTACGCTTGAAAGGCGCAAAAATCA-TGAAAT 998
||||| || | |||||||| ||||||||||||||||||||||||||| | || |||
Sbjct 931 GGTAAGAAGATGATTTGGTGTGCGGTGATTACGCTTGAAAGGCGCAAAAAT-AGTGGAAT 989
Query 999 TTGGGGAAAAGTCGAGTGGTTTGATCATGTGCTAACAGTCCCTATAACATGTGTTTTAGA 1058
||||||||| || |||||||||| ||||||||| ||||| |||| ||||| |||||| |
Sbjct 990 TTGGGGAAACGTTGAGTGGTTTGCTCATGTGCTTACAGTTCCTAAAACATTTGTTTTCCA 1049
Query 1059 AAAGGTTCTTGTTGCTACTGT 1079
|||| |||||| |||||||||
Sbjct 1050 AAAGTTTCTTGCTGCTACTGT 1070
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 401 bits (217), Expect = 6e-111
Identities = 546/697 (78%), Gaps = 54/697 (8%)
Strand=Plus/Plus
Query 50 CGTCACTTCCCGATGCGTTGCTAATAAGC-TGTATCGCACG-AGTCTCAAGATTGTATTA 107
||||||||||||||| |||||| | ||| | | ||||||| | ||||||||||||| ||
Sbjct 5 CGTCACTTCCCGATGATTTGCTATTGAGCATCT-TCGCACGCA-TCTCAAGATTGTACTA 62
Query 108 TCCGACTCTCTCCCTTGTCTCCAAAAGCTTTCGATCTCTCCTAGCTTCACCGGAGCTTTA 167
|||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 63 TCCGACTCTCTCTCTTGTCTCCAAGAGCTTCCGATCTCTACTAGCTTCACCGGACCTTTA 122
Query 168 CAAGGCCCGATTACTCTT-GGACCGCACCGAGAGTTGTCTCTATGTATGC-TTAAAGCTA 225
||| ||||||| |||||| || || ||| |||||||||||||| || ||| || | |
Sbjct 123 CAAAGCCCGATCACTCTTAGG-CCACACTGAGAGTTGTCTCTACGTGTGCTTTCATTTTG 181
Query 226 AGTCCT---TCTGAGA-ACCCTAGCTGGTTCACTCTCTGCCTGAAACCCGATGAAACCCT 281
| | || || | | || | | |||||||||||||| | |||||| || | ||||||
Sbjct 182 A-TTCTGGCCCT-A-ACACAC-A-TTGGTTCACTCTCTGTCGGAAACCTGACGGAACCCT 236
Query 282 AACTTATGACACAAGTAATAAGAAAAAGTCAAGTGACTATGTTTTGGCTAAAGTCCCAAT 341
||| ||||||| ||||| ||||| ||||||| || ||||||||||||| || |||||
Sbjct 237 AACCAATGACACCAGTAAGAAGAAGAAGTCAAATGGGTATGTTTTGGCTACTGTGCCAAT 296
Query 342 TCCACATTCTCCTCCTGTGAAA-AGTTCGAGTCTCGTGGTGGTTGGTTCTAATATCTACA 400
||| ||||||||||||| ||| ||| |||||||||| |||||||||| |||||||||
Sbjct 297 TCCCCATTCTCCTCCTG-CAAACTTTTCAAGTCTCGTGGCGGTTGGTTCTGATATCTACA 355
Query 401 ACATTGGCTGTAAT--ATCTACAGCATTGGCAGATCCAGATCACCTTAC-TCTAACGTTT 457
||||||| || || || ||| | | | || || | || | | |||| || |
Sbjct 356 ACATTGG-TG-GATCCATTTAC--C--TAG--GA-CC----CTCC-T-CGTCTAGTGTCT 400
Query 458 CTATTTTTGATTGCCGGTCTCACACATGGCGCGAGGCTCCAAGCTTGCCAGTGGAGCT-A 516
| ||| | |||| || |||||||| |||||||||||||||||||||| |||||||| |
Sbjct 401 CGATTCTGGATTCCCAGTCTCACATGTGGCGCGAGGCTCCAAGCTTGCGGGTGGAGCTGA 460
Query 517 TTTGCAGTTTCTGCTGGCGTCGTTGATGGAAAGATATATGTAACCA-GAAGCTGCAAAGA 575
| | || ||||||| ||||| |||| ||||||||||||| | || |||||| ||||||
Sbjct 461 TGT-CACATTCTGCTAGCGTCCTTGACAGAAAGATATATGT-AGCAGGAAGCTACAAAGA 518
Query 576 TGACGAT-TC--TTATAACT--TG-AAGAACACT-TTCGAGGTGTTCGACACAAAAACAC 628
|| | || | || |||| || |||||| | |||||||||||||||||||||||||
Sbjct 519 TGGCAATGGCGATTCCAACTCCTGTAAGAAC-TTGTTCGAGGTGTTCGACACAAAAACAC 577
Query 629 AAGTTTGGGATCATGTGCCAAGCCCTTACAGCCAA-ACAAAACACAACTCTTACTCCAAA 687
|||| ||| ||| || ||| | ||| | |||| || |||||| || | ||||||||||
Sbjct 578 AAGTGTGGCATCCTGAGCCCATCCCATGCAGC-AAGACAAAAGGCATTTTTTACTCCAAA 636
Query 688 AGC-CTATGTATTGACGAAAAGTGGT-ACGTGGTGAC 722
||| | ||||||||| | ||||| | |||||| |||
Sbjct 637 AGCGC-ATGTATTGATGGAAAGTT-TCACGTGGAGAC 671
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 198 bits (107), Expect = 8e-50
Identities = 561/768 (73%), Gaps = 80/768 (10%)
Strand=Plus/Plus
Query 42 CCCAAATCCGTCACTTCCCGATGCGTTGCTAATAAG-CTGT-ATCGCACGAGTCTCAAGA 99
|||||||| |||| |||| ||| ||||| || | | | |||||||| ||| |||||
Sbjct 74 CCCAAATCAGTCA-ATCCCTATGATTTGCT-ATTGGAC-ATCATCGCACGCGTCCCAAGA 130
Query 100 TTGTATTATCCGACTCTCTCCCTTGTCTCCAAAAGCTTTCGATCTCTCCTAGCTTCACCG 159
||||| |||||||||||||| || || ||||| ||||||||||| |||||||||||||||
Sbjct 131 TTGTACTATCCGACTCTCTCACTCGTTTCCAAGAGCTTTCGATCCCTCCTAGCTTCACCG 190
Query 160 GAGCTTTACAAGGCCCG-AT-T-ACTCTTGGACCGCACCGAGAGTTGTCTCTATGTATGC 216
||||||||||||||| | | | | |||||| | ||||||| ||||||||||||| |||
Sbjct 191 GAGCTTTACAAGGCCAGCAGGTCATTCTTGGGTCACACCGAGCGTTGTCTCTATGTGTGC 250
Query 217 TTAAAG--CTAAGTCCTTCTGAGAACCCTAGCTGGTTCACTCTCTGCCTGAAACCCGATG 274
||| | || ||||| | | | |||||||||| || || | ||| || |||
Sbjct 251 TTACGGTGCT--GTCCTGGTTAT--C----GCTGGTTCACCCTGTGTCGGAAGCCAGATC 302
Query 275 AAACCCTAACTTATGACACAAGT-AATAAGAAAAAGTCAAGTGACTATGTTTTGGCTAA- 332
|||||||| | ||||||| | | || ||||| |||||||| ||||||||||| ||
Sbjct 303 AAACCCTATCCAATGACACCACTGAA-AAGAA---GTCAAGTGGGTATGTTTTGGC-AAC 357
Query 333 AGTCCCAATTCC-ACATTCTCCT---CCTGTGAAAAGTTCGAGTCTCGTGGTGGTTGGTT 388
|||||| ||||| | || || | || | | |||||||||||||||||||||||
Sbjct 358 AGTCCCCATTCCTAGTTT-TCATAAACC-GCGCTT--TTCGAGTCTCGTGGTGGTTGGTT 413
Query 389 CTAATATCTACAACATT---GG-C--TG-T--AATATCT--A--CAGCATTGGCAGA-TC 434
|| |||||||| |||| || | | | || ||| | | | |||| | | ||
Sbjct 414 CTGATATCTACTACATCCACGGGCCCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTC 473
Query 435 -CA-GAT--CACCTTACTCTAACGTTTCTATTTTTGATTGCCGGTCTCACACATGGCGCG 490
|| | | | || || || | | | ||| | ||||| |||||||||| |||||
Sbjct 474 ACACG-TGGCGCCAGGTTCAAA-GCT-CGATTCTAGATTGTCGGTCTCACAGGCGGCGCA 530
Query 491 AGGCTCCAAGCTTGCCAGTGGAGCTATTTG-CAGTTTCTGCTGGCGTCGTTGATGGAAAG 549
||||||||| |||||| ||||| | ||| | || || ||||| ||||| ||| || ||||
Sbjct 531 AGGCTCCAATCTTGCCGGTGGAAC-ATTCGTCACTTACTGCTAGCGTCCTTGGTGAAAAG 589
Query 550 ATATATGTAACCAGAA-GCTGCAAAGATGACG-ATTCTTA--TAACTTGAAGAACACTTT 605
||||||||| | || | | | || ||| | | ||| | | | ||| | |||
Sbjct 590 ATATATGTAGC-AGGATGTTACAGCGAT-ATGCATT-T-AGGTT-CTTCTTT--C--TTT 640
Query 606 CGAGGTGTTCGACACAAAAACACAAGTTTGGGATCA-TGTGCCAAGCCCTTACAGCCAAA 664
|||||||||||||| ||||| ||||||||| | | || ||| | |||||||||| | |
Sbjct 641 -GAGGTGTTCGACACGAAAACGGAAGTTTGGGTT-AGTGAGCCCATCCCTTACAGCGACA 698
Query 665 CAAAACACAACT--CTT-ACTCCAAAAGCCTATGTATTGACGAAAAG-TGGTACGTGGTG 720
|||| |||||| ||| || |||||||| | |||||||| | |||| | | || |||
Sbjct 699 GAAAATACAACTTTCTTCACCCCAAAAGCATTTGTATTGATGGAAAGATCC-ATGTAGTG 757
Query 721 ACTAAAAGAAAGGTGGTTG---CTTACAATCCCAAGAAAGGTAAATGG 765
||| | || ||| ||||| |||||||||||||| |||||| ||||
Sbjct 758 ACTGACAGTGAGGGGGTTGTTGCTTACAATCCCAAGGAAGGTATATGG 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5