BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330601
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38670.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1074 0.0
AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superf... 219 5e-56
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 176 3e-43
AT3G08810.1 | Symbols: | Galactose oxidase/kelch repeat superf... 165 7e-40
AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 147 2e-34
> AT5G38670.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15475786-15476871 FORWARD LENGTH=876
Length=876
Score = 1074 bits (581), Expect = 0.0
Identities = 791/889 (89%), Gaps = 27/889 (3%)
Strand=Plus/Plus
Query 1 ATGCCGCCGCAGTCGAACCCGAATCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTC 60
|||| | |||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGTCGCAAACGAACCCTAATCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTC 60
Query 61 GCACGGGTCTCAAAATTGTATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCT 120
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GCACGGGTCTCAAGATTGTATTATCCGGCTCTCTCCCTCGTCTCCAAGAGCTTTCGATCT 120
Query 121 CTCCTAGCTTCACCAGAGATTTACAAGACCCGATCACTCTTGGACCGCACCGAGAGTTGT 180
||| |||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CTCATAGCTTCACCGGAGCTTTACAAGACCCGATCACTCTTGGACCGCACGGAGAGTTGT 180
Query 181 CTCTATGTCGTCTCGATTCTGGATTGCACGTCTAACACGTGGCGTGAGGGCCCTAGCTTG 240
||||| | |||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTCTA-------T--ATTCTGTATTGCACGTCTAACACGTGGCACGAGGGCCCTAGGTTG 231
Query 241 CGGGTGAAGCTAATGTCATGTGCTGCTTGCGTTCTTGATGGAAAGATATATGTATCAGGA 300
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 232 CGGGTGAAGCTAATGTCATGTACTGCTTGCGTTCTTGATGAAAAGATATATGTATCAGGA 291
Query 301 AGCTGCGAAGATGACGATTCCGCGACGTTCCAAGTGTTTGACACAAATACACAAACTTGG 360
|| ||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 292 AGATGCAAAGATGGCGACTCCATGACGTTCCAAGTGTTTGACACAAATACACAAACTTGG 351
Query 361 GATC-TTGTGCCCATCCCTTGCAGCGAGACAAAACACGACTTTCACTACAAAATCGTATG 419
|||| || || | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 352 GATCCTT-TGTCTGTCCCTTGCAGCGAGACAAAACACGACTTTCACTACAAAATCGTAAG 410
Query 420 CTTTGACGGAAAGTTGCACATGGTGAG-TAACAAAGGTGTGAATGCTTACAATACCAAGG 478
||||||||||| |||||| ||||||| || |||||||||| ||||||||||| ||||||
Sbjct 411 GTTTGACGGAAAATTGCACCTGGTGAGCTA-CAAAGGTGTGGATGCTTACAATTCCAAGG 469
Query 479 AAGGTAGATGGGACGTGGTTGA-ACCAAGCAGAGAACATTTTAAGTATTTATATGATTCT 537
|||||||||||||| ||||| | |||||||| ||||||| ||||||||||||||||| |
Sbjct 470 AAGGTAGATGGGACCTGGTT-ACACCAAGCATAGAACATAATAAGTATTTATATGATTGT 528
Query 538 TATTGCAAAATAGGGAATGTTTGGTACTCTGTTTTAAAAGGACCGT-TCTCAAAGTTCAT 596
||| |||| |||||||||||||||||| || || |||||||| | |||||| || | |
Sbjct 529 TATCGCAATATAGGGAATGTTTGGTACACTATTGTAAAAGGAGA-TATCTCAACGTCCGT 587
Query 597 ATGGTA-TAACAC--TGAGCAAAGAGTA-TGGAGAGAACT-GAAGGGTATGGAAGGATTA 651
||||| || ||| |||| |||||| | |||||||| || ||||||||||| |||||||
Sbjct 588 ATGGTGGTATCACAGTGAGGAAAGAG-AGTGGAGAGA-CTTGAAGGGTATGGTAGGATTA 645
Query 652 CCTAAGTTCCCTTTTGATGCTTGTGTTAGATTGGCTGATTATGGTGGGAAGATGGTGGTT 711
|||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||| |||
Sbjct 646 CCTAAGTTCCCTATTGATGCTTGTCTTAGAATGGTTGATTATGGTGGGAAGATGGCAGTT 705
Query 712 TTGTGGGATGAGTATTTTCCTGG-CG--GAAAGAAGATGATTTGGTGTGCGGAGATTGCA 768
|||||||| || ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 706 TTGTGGGACGACTATTTGCCTGGGCGCCGAAAGAAGATGATTTGGTGTGCGGAGATTGCG 765
Query 769 CTTGAAAGACGCGGAAGTTTGGAAATTTGGGGGGAAGTTGAATGGTTTGATCATATGCTT 828
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||
Sbjct 766 CTTGAAAGACGCGGAAGTTTGGAAATATGGGGAAAAGTTGAATGGTTTGCTCATGTGCTT 825
Query 829 ACAGTCCCTGGACATTATGAATTCGTCAAGGTTCTTTCTGTTACTGTTT 877
||||||||| |||| ||||||||||||||||||||| ||| |||| |||
Sbjct 826 ACAGTCCCTAGACAATATGAATTCGTCAAGGTTCTTGCTGCTACTCTTT 874
> AT5G38680.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:15477324-15479040 FORWARD LENGTH=1074
Length=1074
Score = 219 bits (118), Expect = 5e-56
Identities = 163/185 (88%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 5 CGCCGCAGTCGAACCCGAATCCGTCACTTCCCGATGATTTGATATTGAGCTGCGTCGCAC 64
||||| | |||||| | ||||||||||||||||||| ||||||| | |||||| ||||||
Sbjct 29 CGCCGGAATCGAACTCAAATCCGTCACTTCCCGATGCTTTGATAATAAGCTGCATCGCAC 88
Query 65 GGGTCTCAAAATTGTATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCC 124
| ||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 89 GAGTCTCAAGATTGTATTATCCGATTCTCTCCTTTGTCTCCAAGAGCTTTCGATCTCTCC 148
Query 125 TAGCTTCACCAGAGATTTACAAG-ACCCGATCACTCTTGGACCGCACCGAGAGTTGTCTC 183
|||||||||| ||| |||||||| | | | ||||||||| ||||||||||| |||||||
Sbjct 149 TAGCTTCACCGGAGCTTTACAAGGAACGG-TCACTCTTGAACCGCACCGAGGGTTGTCTA 207
Query 184 TATGT 188
|||||
Sbjct 208 TATGT 212
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 176 bits (95), Expect = 3e-43
Identities = 145/169 (86%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 22 AATCCGTCACTTCCCGATGATTTGATATTGAG-C-TGCGTCGCACGGGTCTCAAAATTGT 79
|||||||||||||||||||||||| ||||| | | | | ||||||| ||||||| ||| |
Sbjct 79 AATCCGTCACTTCCCGATGATTTGGTATTG-GTCAT-CATCGCACGCGTCTCAATATTAT 136
Query 80 ATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGA 139
| ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 137 ACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGGAGC 196
Query 140 TTTACAAGACCCGATCACTCTTGGACCGCACCGAGAGTTGTCTCTATGT 188
|||||||| | | |||||||||| ||||| |||||| ||||||||||
Sbjct 197 TTTACAAGGTCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGT 245
> AT3G08810.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2675631-2676693 REVERSE LENGTH=1063
Length=1063
Score = 165 bits (89), Expect = 7e-40
Identities = 141/165 (85%), Gaps = 8/165 (5%)
Strand=Plus/Plus
Query 25 CCGTCACTTCCCGATGATTTGATATTGAGC-TGCGTCGCACGGGTCTCAAAATTGTATTA 83
|||||||||||||||||| || |||||||| | | ||||||| ||||||| |||||| ||
Sbjct 101 CCGTCACTTCCCGATGATGTGCTATTGAGCAT-CTTCGCACGCGTCTCAAGATTGTACTA 159
Query 84 TCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGATTTA 143
|||||||||||| | ||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 160 TCCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGCTTTA 219
Query 144 CAAGACCC-GATCACTCTTGG-ACCGCACCGAGAGT-TGTCTCTA 185
||| | || | ||||||| || | |||||||| | ||||||||
Sbjct 220 CAA-AGCCAGGTCACTCTCGGGAAA-CACCGAGA-TCTGTCTCTA 261
> AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2991655-2992679 REVERSE LENGTH=936
Length=936
Score = 147 bits (79), Expect = 2e-34
Identities = 140/169 (83%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 22 AATCCGTCACTTCCCGATGATTTGATATTG-AGC-TGCGTCGCACGGGTCTCAAAATTGT 79
||||||||| ||||| ||||||| || || | | | ||||||| | || ||| |||||
Sbjct 174 AATCCGTCAATTCCCTATGATTTTCTAATGCA-CAT-CGTCGCATGCATCCCAAGATTGT 231
Query 80 ATTATCCGACTCTCTCCCTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGA 139
| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ACTAT--GAGTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAGC 289
Query 140 TTTACAAGACCCGATCACTCTTGGACCGCACCGAGAGTTGTCTCTATGT 188
|||||||| | |||| |||| |||||| |||||||||||||||||
Sbjct 290 TTTACAAGGTAAGGTCACAGTTGGGCCGCACAGAGAGTTGTCTCTATGT 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5