BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330612
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38490.1 | Symbols: | Domain of unknown function (DUF313) ... 665 0.0
AT5G35780.1 | Symbols: | pseudogene, hypothetical protein, con... 638 0.0
AT5G38500.1 | Symbols: | Domain of unknown function (DUF313) ... 342 4e-93
> AT5G38490.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:15411672-15413132 REVERSE LENGTH=1461
Length=1461
Score = 665 bits (360), Expect = 0.0
Identities = 588/694 (85%), Gaps = 32/694 (5%)
Strand=Plus/Plus
Query 465 AGAAA-ACTTTGATAATCTTAATGGAGCTTCTA---CTTCTTCATCGCTCATGAACCTTC 520
||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 586 AGAAACTCTTTGATAATCTTAATGGAGCTTCTACTTCTTCTTCATCGCTCCTGAACCTTC 645
Query 521 ATGGTCTTGAACCTTCGACAGAGACGAAAGACATAACAAACCCTAATTACCAATCTTCTT 580
| |||||||||||||||||||||| |||||| || |||||||||||||||||||||| |
Sbjct 646 CTTGTCTTGAACCTTCGACAGAGACAAAAGACGTACCAAACCCTAATTACCAATCTTCGT 705
Query 581 CTCCGTCTTCGTGCCTAACAGAGAACACAAGCAGCAAGAGGCGTGCGGTGGAACAGAGAA 640
|||||||||| |||||||||| ||| |||| | ||||||||||||| ||||| ||||| |
Sbjct 706 CTCCGTCTTCATGCCTAACAGGGAAGACAAACCGCAAGAGGCGTGCCGTGGAGCAGAGGA 765
Query 641 AGAGCAAGGGTGGATTCAAGAAAACAAAGG-TTGTACTTTATCCATGCGCGGTG-AGAGA 698
|||| ||| | |||||||| |||| || | |||| ||| | | ||| | |||
Sbjct 766 AGAG---TGGTAAAGTCAAGAAAGTTAAGGTTTCTCCTTT-GCCAAG-GTTGTGTACAGA 820
Query 699 GACACCAGAGTGGGTTTTCCAGGTGATGAGATACATGAACGCGGATGCCGAAAACCCGAG 758
|| || |||||| ||||||| |||||||||||||||||||| ||||| |||| ||||||
Sbjct 821 GATGCCTGAGTGGATTTTCCAAGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAG 880
Query 759 GCTGATATTTGAGAGGATTCTGTTCAATAGTGATGTCAACTCAAA-CTTGAGCCGTCTCT 817
||||||||||||||||| |||||| || ||||||||||||||||| ||| || |||||||
Sbjct 881 GCTGATATTTGAGAGGACTCTGTTTAAGAGTGATGTCAACTCAAACCTT-AGTCGTCTCT 939
Query 818 TAATCCCTTTTCAGAAGCTAATCAGAAACGACTTCTTGACGCCTTTGGAGTGTCGAGCCT 877
|||| ||||| |||||||||||||||||||| ||| |||| ||| ||||||| ||| |
Sbjct 940 TAATGCCTTTCCAGAAGCTAATCAGAAACGATTTCCTGACTCCTGCGGAGTGTAGAG-C- 997
Query 878 TA-G-AGAGAGATGAAGAC-A--ATGAAGATGA--A-GAGAATATTGGTGTGGGAACTAT 929
|| | ||| ||| |||||| | ||||||| || | |||||||||||||||||||| |
Sbjct 998 TATGCAGAAAGACGAAGACAATGATGAAGAAGACGACGAGAATATTGGTGTGGGAACGGT 1057
Query 930 TCTTGTGAATCAAAGGTTT-AAAATGTGGGGTTTACGTTTTAAGATATGGGTGATGGAGA 988
||||||||| ||||| ||| |||| ||||||||| ||||| |||||||||| ||| | |
Sbjct 1058 TCTTGTGAACCAAAGATTTCAAAA-GTGGGGTTTGCGTTTCAAGATATGGGCGAT-G-G- 1113
Query 989 AGAAGGATTCTGGACATGGAACCTTGAATTACACTTTGAATTGGGGTTGGAACGATGTAG 1048
||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1114 AGAAGGACTCTGGACATGGAACATTGAATTACACTTTGAATTGGGGTTGGAATGATGTCG 1173
Query 1049 TCAAGGGTA--ATGACTTGAAAGCCCATGACAAGATCAGTCTTTGGACTTTCAGGTGCCG 1106
|||| ||| | | ||| |||| | ||||||||||| ||||||||||||||||||||
Sbjct 1174 TCAAAAGTAGCA-G-CTTAAAAGTCGGCGACAAGATCAGCCTTTGGACTTTCAGGTGCCG 1231
Query 1107 TGGAGTCCTTTGCTTTGCACTTGACATAGAGTAG 1140
||||||||| |||||||||||||||| |||||||
Sbjct 1232 TGGAGTCCTCTGCTTTGCACTTGACACAGAGTAG 1265
> AT5G35780.1 | Symbols: | pseudogene, hypothetical protein, contains
Pfam profile PF03754: Domain of unknown function (DUF313)
| chr5:13955413-13956421 FORWARD LENGTH=1009
Length=1009
Score = 638 bits (345), Expect = 0.0
Identities = 516/598 (86%), Gaps = 14/598 (2%)
Strand=Plus/Plus
Query 537 GACAGAGACGAAAGACATAACAAACCCTAATTACCAATCTTCTTCTCCGTCTTCGTGCCT 596
|||||||| |||| || ||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 415 GACAGAGAAGAAAAACCTAACAAACCCTAATTACCAATCTTCATCTTCGTCTTCATGCCT 474
Query 597 AACAGAGAACACAAGCAGCAAGAGGCGTGCGGTGGAACAGAGAAAGAGCAAGGGTGGATT 656
||| ||||||| |||| ||||||||||||| ||| | ||||| ||||| ||| | |
Sbjct 475 AACGGAGAACAAAAGCCGCAAGAGGCGTGCCGTGCAGCAGAGGAAGAG---TGGTAAACT 531
Query 657 CAAGAAAACAAAGGTTG-TACTTTATCCATGCGCGGT-GAGAGAGACACCAGAGTGGGTT 714
||||||| | | ||||| | |||| ||| | | || | |||||| ||||||||||||
Sbjct 532 CAAGAAAGCGAGGGTTGTTTCTTT-GCCAAG-GATGTCTATAGAGACGCCAGAGTGGGTT 589
Query 715 TTCCAGGTGATGAGATACATGAACGCGGATGCCGAAAACCCGAGGCTGATATTTGAGAGG 774
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 590 TTCCAGGTGATGAGATACATGAACGCTGATGCTGAAACCCCGAGGCTGATATTTGAGAGG 649
Query 775 ATTCTGTTCAATAGTGATGTCAACTCAAACTTGAGCCGTCTCTTAATCCCTTTTCAGAAG 834
| ||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| ||
Sbjct 650 ACTCTGTTCAATAGTGATGTCAAATCAGGCCTGAGCCGTCTCTTAATCCCTTTCCAGCAG 709
Query 835 CTAATCAGAAACGACTTCTTGACGCCTTTGGAGTGTCGAGCCTTAGAGAGAGATGAAGAC 894
||||||||||||||||||||||||||| ||||||| ||||| || ||| ||| ||||||
Sbjct 710 CTAATCAGAAACGACTTCTTGACGCCTGCGGAGTGTAGAGCCATACAGAAAGACGAAGAC 769
Query 895 AATGAAGATGA-AGAGAATATTGGTGTGGGAACTATTCTTGTGAATCAAAGGTTTAAAAT 953
|| |||||||| | ||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 770 AACGAAGATGACA-AGAATATTGGTGTGGGAACGATTCTTGTGAACCAAAGATCTAAAAT 828
Query 954 GTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGAAGGATTCTGGACATGGAACCTT 1013
||||||||| ||||| |||||||||| |||||||||| | | |||||||| ||||| ||
Sbjct 829 GTGGGGTTTGCGTTTCAAGATATGGGCGATGGAGAAG--G-ACTCTGGACACGGAACATT 885
Query 1014 GAATTACACTTTGAATTGGGGTTGGAACGATGTAGTCAAGGGTAATGACTTGAAAGCCCA 1073
|||||||| |||||||||||||||||||||||||||||| ||||| | ||| |||| |
Sbjct 886 GAATTACATTTTGAATTGGGGTTGGAACGATGTAGTCAAAGGTAACGGCTT-AAAGGCTG 944
Query 1074 T-GACAAGATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTTTGCTTTGCACTTGA 1130
||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 945 GCGACAATATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTCCTCTTGA 1002
> AT5G38500.1 | Symbols: | Domain of unknown function (DUF313)
| chr5:15416018-15417253 REVERSE LENGTH=1236
Length=1236
Score = 342 bits (185), Expect = 4e-93
Identities = 338/409 (83%), Gaps = 21/409 (5%)
Strand=Plus/Plus
Query 537 GACAGAGACGAAAG-ACATAACAAACCCTAATTACCAATCTTCTTCTCCGTCTTCGTGCC 595
|||||||||||||| | || |||||||||||||||||||||||||||||||||| ||||
Sbjct 573 GACAGAGACGAAAGTTC-TACCAAACCCTAATTACCAATCTTCTTCTCCGTCTTCATGCC 631
Query 596 TAACAGAG-A--ACACAAG-CAGCAAGAGGCGTGCGGTGGAACAGAGAAAGAGCAAGGGT 651
|||| ||| | ||||||| | ||||||||||||| ||||||||||| ||||| |||
Sbjct 632 TAACGGAGAACGACACAAGTC-GCAAGAGGCGTGCCGTGGAACAGAGGAAGAG---TGGT 687
Query 652 GGATTCAAGAAAACAAAGG-TTGTACTTTATCCATGCGCGGT-GAGAGAGACACCAGAGT 709
| |||||||| ||||| || | |||| ||| | | || | |||||| || ||||
Sbjct 688 AAAGTCAAGAAAGTAAAGGTTTCTCCTTT-GCCAAG-GTTGTCTACAGAGACGCCTGAGT 745
Query 710 GGGTTTTCCAGGTGATGAGATACATGAACGCGGATGCCGAAAACCCGAGGCTGATATTTG 769
|||||||||| | |||| || |||||||||| ||||| |||| ||||| |||||| ||||
Sbjct 746 GGGTTTTCCAAGCGATGGGACACATGAACGCTGATGCTGAAACCCCGAAGCTGATCTTTG 805
Query 770 AGAGGATTCTGTTCAATAGTGATGTCAACTCAAACTTGAGCCGTCTCTTAATCCCTTTTC 829
| |||| ||||||||| |||||||||||||| ||| | ||||||||||||||||| || |
Sbjct 806 AAAGGACTCTGTTCAAGAGTGATGTCAACTCTAACCTCAGCCGTCTCTTAATCCCATTCC 865
Query 830 AGAAGCTAATCAGAAACGACTTCTTGACGCCTTTGGAGTGTCGAGCCTTAG-AGAGA-GA 887
||||||||||||||||||||||||||||||| ||||||||||||| | | || || ||
Sbjct 866 AGAAGCTAATCAGAAACGACTTCTTGACGCCAGAGGAGTGTCGAGCCAT-GCAG-GAAGA 923
Query 888 TGAAGACAATGAAGATGAAGAGAATATTGGTGTGGGAACTATTCTTGTG 936
||||||| || || ||||| |||| |||||||||| |||||||||
Sbjct 924 CAAAGACAAAGACGACGAAGA---TATTAGTGTGGGAACGATTCTTGTG 969
Score = 259 bits (140), Expect = 4e-68
Identities = 214/249 (86%), Gaps = 8/249 (3%)
Strand=Plus/Plus
Query 885 AGATGAAGACAATGAAGATGAAGAGAATATTGGTGTGGGAACTATTCTTGTGAATCAAAG 944
||| |||||||| || || | | || ||||||||| |||||| ||||||||||| |||||
Sbjct 987 AGACGAAGACAAAGACGACG-A-AG-ATATTGGTGCGGGAACGATTCTTGTGAACCAAAG 1043
Query 945 GTTTAAAATGTGGGGTTTACGTTTTAAGATATGGGTGATGGAGAAGAAGGATTCTGGACA 1004
||||||||||||||||| ||||| |||||||||| ||| | | ||||||| ||||||||
Sbjct 1044 ATTTAAAATGTGGGGTTTGCGTTTCAAGATATGGGGGAT-G-G-AGAAGGACTCTGGACA 1100
Query 1005 TGGAACCTTGAATTACACTTTGAATTGGGGTTGGAACGATGTAGTCAAGGGTAATGA-CT 1063
||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 1101 TGGAACCTTGAATTACATTTTGAATTGGGACTGGAATGATGTCGTCAAAGGTAA-CAGCT 1159
Query 1064 TGAAAGCCCATGACAAGATCAGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTTTGCTTTG 1123
| |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1160 TAAAAGCCGGCGACAATATCGGTCTTTGGACTTTCAGGTGCCGTGGAGTCCTCTGCTTTG 1219
Query 1124 CACTTGACA 1132
| |||||||
Sbjct 1220 CTCTTGACA 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5