BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330628
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1218 0.0
> AT5G38360.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:15331711-15333625 REVERSE LENGTH=1282
Length=1282
Score = 1218 bits (659), Expect = 0.0
Identities = 788/848 (93%), Gaps = 17/848 (2%)
Strand=Plus/Plus
Query 1 ATGGAGGTAATCGAACA-ACGAAGAA-GCAAATCCGAAAGAGAGAATCCACCATTGGTGT 58
|||||||||||||| || | ||| || ||||||||||||||||||||||||||||||||
Sbjct 223 ATGGAGGTAATCGAGCAGA-GAA-AATCCAAATCCGAAAGAGAGAATCCACCATTGGTGT 280
Query 59 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAACATTGGTTACCTTTCTTCT 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 281 TTGTACATGGAAGCTATCACGCAGCTTGGTGTTGGGCTGAAAATTGGTTACCTTTCTTCT 340
Query 119 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAAC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 CTTCTTCTGGGTTTGATTCTTATGCTGTTAGTTTATTAGGTCAGGGTGAAAGTGATGAAC 400
Query 179 CTTTGGGAACAGTTGCTGGAACACTTCAGACGCACGCAAGTGATATTGCGGATTTCATTG 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 401 CTTTGGGAACAGTTGCTGGAACACTTCAGACGCACGCAAGTGATATTGCAGATTTTATAG 460
Query 239 AATCGAATCTTGGTTCTTCACCTCCTGTGCTTATTGGTCATTCTTTTGGAGGACTCATTG 298
||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 461 AATCGAATCTTGGCTCTTCACCTCCTGTTCTTGTTGGTCATTCTTTTGGAGGACTCATTG 520
Query 299 TTCAATATTACTTGGCAAATATTGTAAACAAGCAGA-CGTTAGGAACGGAAAATGCGTTT 357
||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||
Sbjct 521 TTCAATATTACTTGGCAAATATTGTAAACAAGC-GTTCATTAGGTACGGAAAATGCGTTT 579
Query 358 CCAGAACTTTCAGGGGTTGTACTTGTTTGCTCGGTTCCACCTTCGGGTAATAGCGGCTTA 417
||||| |||||||||| ||| | |||||||||||||||||||| |||||||||||||||
Sbjct 580 CCAGAGCTTTCAGGGGCGGTAATGGTTTGCTCGGTTCCACCTTCCGGTAATAGCGGCTTA 639
Query 418 GTTTTACGTTATCTCTTCTCGAAACCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCT 477
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 640 GTGTTACGTTATCTCTTTTCTAAACCTGTGGCTGCTTTTAAGGTTACTCTCAGTTTAGCT 699
Query 478 GCTAAAGGTTTTCAGAAATCTATTCCCCTTTGTCGAGAAACATTCTTCTCTCAAGCTATG 537
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 700 GCTAAAGGTTTTCAGAAATCTATTCCTCTTTGTCGAGAAACATTCTTCTCTCAAGCCATG 759
Query 538 GATGATCAACTTGTGAAGTGTTACCAGGATCTTATGA-TAGAGAGTTCACGGATGCCGCT 596
|||||||||||||||||| | ||||||||||| | ||||||||||| || ||| |
Sbjct 760 GATGATCAACTTGTGAAG-----C--GGATCTTATGAGT-GAGAGTTCACGAATACCGTT 811
Query 597 GTTTGATCTGAGGAAGCTAAACGCATCACTTCCAGTACCAAAACCAATGGAAAATTCTAC 656
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 812 GTTTGATTTGAGAAAGCTAAACGCATCACTTCCAGTACCAAAACCAATGGAGAATTCGAC 871
Query 657 AAATGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGATTG-TGAGGGGCTGAAGG 715
|| |||||||||||||||||||||||||||||||||||||| | ||| || |||||||
Sbjct 872 CAAGGTTCTTGTTTTAGGTGCCAAAGATGACTTCATAGTGGAC-GATGAAGGACTGAAGG 930
Query 716 AAACCGGGTGGTTTTATGAGGTTGAACCAGTTTGTATTGAAGGTGTTGCTCATGACATGA 775
|||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 931 AAACCGGGAGGTTTTATGAGGTTGAACCGGTTTGTATTAAAGGTGTTGCTCATGACATGA 990
Query 776 TGCTAGATTGTTCATGGGAGAAAGGTGCTGAGGTTCTTTTGAGTTGGCTTTGTGGTTTGT 835
|||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
Sbjct 991 TGCTTGATTGTTCATGGGAGAAAGGTGCTAAGGTTCTTTTGAGTTGGCTATGTGATTTAT 1050
Query 836 CTAAACCG 843
||||||||
Sbjct 1051 CTAAACCG 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5