BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330647

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38090.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   270    7e-72


> AT5G38090.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G38080.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:15193466-15194089 REVERSE LENGTH=441
Length=441

 Score =  270 bits (146),  Expect = 7e-72
 Identities = 292/358 (82%), Gaps = 28/358 (8%)
 Strand=Plus/Plus

Query  1    ATGACTAATACTAATGTTTCTGCTACTAAGTCTACTGAAACAGTCTTCCATGAATCTCCT  60
            ||||||||||||||||| ||||||| |||| |||||| |||| || ||||||||||||||
Sbjct  1    ATGACTAATACTAATGTGTCTGCTAATAAGCCTACTGCAACAATCGTCCATGAATCTCCT  60

Query  61   AGCCTCCTCCGTCTCTGGTGGATGAACTCGAATGTACGATATGACATTGCGATGAACAGC  120
            |||| ||||||| | |||||||||||  |||| |||||||||||||||||||||||||||
Sbjct  61   AGCCCCCTCCGTGTATGGTGGATGAAGACGAACGTACGATATGACATTGCGATGAACAGC  120

Query  121  TTCATTATAATCCTCAACATTGCAGCGATCATGTATATAAAATTTAACAAGATCCCCTTA  180
            | |||||||||||||||||||||||| ||| ||||||| ||||| | |||||| || || 
Sbjct  121  TCCATTATAATCCTCAACATTGCAGCAATCTTGTATATGAAATTCACCAAGATTCCATTT  180

Query  181  AACGAAGTATGGATTTCGGGAATCAAGGATTCTTCACAATGCAAAGATGCCTACATCATA  240
            |||||||| ||  |   |  ||||  |||||         ||       | ||| |||| 
Sbjct  181  AACGAAGT-TGC-T---G--AATCTTGGATT---------GC-------C-TACGTCATG  216

Query  241  GGACGCATCTGTCATAAC-TTAGGCTTTGTTATTTTCCTCCACCTC-TGTTATTGTATCT  298
            |||||||||||| | ||  || ||||||||||||||||| || ||| | | |||||||||
Sbjct  217  GGACGCATCTGTAACAATATT-GGCTTTGTTATTTTCCTTCATCTCCTCT-ATTGTATCT  274

Query  299  CTACCCGTTTGGCTCTATTCGTTGGTCTACTCTTTGGTCTACCTTGTTGGCTATGGTA  356
            ||||||| |||||||||||||| | ||||| |||| ||||||||| ||||||||||||
Sbjct  275  CTACCCGCTTGGCTCTATTCGTCGTTCTACACTTTTGTCTACCTTATTGGCTATGGTA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5