BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg330647 Length=462 Score E Sequences producing significant alignments: (Bits) Value AT5G38090.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 270 7e-72 > AT5G38090.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15193466-15194089 REVERSE LENGTH=441 Length=441 Score = 270 bits (146), Expect = 7e-72 Identities = 292/358 (82%), Gaps = 28/358 (8%) Strand=Plus/Plus Query 1 ATGACTAATACTAATGTTTCTGCTACTAAGTCTACTGAAACAGTCTTCCATGAATCTCCT 60 ||||||||||||||||| ||||||| |||| |||||| |||| || |||||||||||||| Sbjct 1 ATGACTAATACTAATGTGTCTGCTAATAAGCCTACTGCAACAATCGTCCATGAATCTCCT 60 Query 61 AGCCTCCTCCGTCTCTGGTGGATGAACTCGAATGTACGATATGACATTGCGATGAACAGC 120 |||| ||||||| | ||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 61 AGCCCCCTCCGTGTATGGTGGATGAAGACGAACGTACGATATGACATTGCGATGAACAGC 120 Query 121 TTCATTATAATCCTCAACATTGCAGCGATCATGTATATAAAATTTAACAAGATCCCCTTA 180 | |||||||||||||||||||||||| ||| ||||||| ||||| | |||||| || || Sbjct 121 TCCATTATAATCCTCAACATTGCAGCAATCTTGTATATGAAATTCACCAAGATTCCATTT 180 Query 181 AACGAAGTATGGATTTCGGGAATCAAGGATTCTTCACAATGCAAAGATGCCTACATCATA 240 |||||||| || | | |||| ||||| || | ||| |||| Sbjct 181 AACGAAGT-TGC-T---G--AATCTTGGATT---------GC-------C-TACGTCATG 216 Query 241 GGACGCATCTGTCATAAC-TTAGGCTTTGTTATTTTCCTCCACCTC-TGTTATTGTATCT 298 |||||||||||| | || || ||||||||||||||||| || ||| | | ||||||||| Sbjct 217 GGACGCATCTGTAACAATATT-GGCTTTGTTATTTTCCTTCATCTCCTCT-ATTGTATCT 274 Query 299 CTACCCGTTTGGCTCTATTCGTTGGTCTACTCTTTGGTCTACCTTGTTGGCTATGGTA 356 ||||||| |||||||||||||| | ||||| |||| ||||||||| |||||||||||| Sbjct 275 CTACCCGCTTGGCTCTATTCGTCGTTCTACACTTTTGTCTACCTTATTGGCTATGGTA 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22017274062 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5