BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330648
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38070.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1192 0.0
> AT5G38070.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr5:15190229-15191689 FORWARD LENGTH=906
Length=906
Score = 1192 bits (645), Expect = 0.0
Identities = 737/782 (94%), Gaps = 4/782 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGATCATTTAGTGTTGGTGGTTGATCGGTTATCAAGCGATTC-GGGCGTTGGGAC 59
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct 26 ATGGGAGATCATTTAGTGTTGGTGGTTGATCGGTTATCAAGCGATTCTGGTC-TTGGGAC 84
Query 60 GGTGAACCGAACAGAGGTTAAAACTGACTTGGTTAATGGAGATGGTGCACCTGAATCTGT 119
||| |||||| |||| ||| |||||| |||||| | |||||||| | |||||||| |
Sbjct 85 GGTTAACCGAGCAGACCCGAAAGCTGACTCGGTTAACGAAGATGGTGTATCTGAATCTAT 144
Query 120 ATCTGCAGGAACTGATTTATGTGAGAGTAAATTCGTACGGTGTAGGATTTGTCATGATGA 179
|||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 145 ATCTGCAGGAGCTGATTTATGTGAGAGCAAATTTGTACAGTGTAGGATTTGTCATGATGA 204
Query 180 AGATGAAGATTCCAACATGGATACGCCTTGTTCTTGTTCTGGAACATTAAAGTTTGCACA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 AGATGAAGATACCAACATGGATACGCCTTGTTCTTGTTCTGGAACATTAAAGTTTGCACA 264
Query 240 TCATAATTGCGTCCAGAGATGGTGCAATGAGAAAGGTGATACCATATGCGAAATTTGTCG 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 265 TCATAATTGCGTCCAGAGATGGTGCAATGAGAAAGGTGATACGGTATGCGAAATTTGTCG 324
Query 300 TCAGCAATATAAACCTGGCTACACAGCCCCACGACAATTGTTTCACTACACAGGCATTTC 359
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 325 TCAGCAATATAAACCTGGTTACACAGCTCCACGACAATTGTTTCACTACACAGGCATTTC 384
Query 360 TATGAACTTCAGTAGCGATTGGGGAATCGAAGGACTAGATCTTCGTAATCCTTATTTCCT 419
|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 385 TATGAACTTCGGTAGTGATTGGGGAATCGAGGGACTAGATCTTCGTAATCCTTATTTCCT 444
Query 420 AACCTGGGGGCATGCAGATGATGATCATGATCTATACTCATTTCATAGCCCCACAAGCTT 479
|||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 445 AACCTGGGGGGATGCGGATGATGATCATGATCTTTACTCATTTCATAGCCCCACAAGCTT 504
Query 480 GATTTGTTGCCG-CGTAATTGCCTTGCTATTCGTCCTTCTGCTCTTTCTGCGCCATTCTC 538
|||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 505 GATTTGTTGCCGTC-TAATTGCCTTGCTATTCGTCCTTCTGCTCTTCCTGCGCCATTCTC 563
Query 539 TTCCAGTTTTACTAGGTGGAGTCGATGATTTCTCGTTAACTTTGCTCATGTTACCATTAG 598
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 564 TTCCAGTTTTACTAGGTGGAGTCGATGATTTCTCGATAACTTTGCTCATGTTACCATTAG 623
Query 599 TGAGAACATTAGCCATCTTGTTGATTGCATATGTCTTTGTCAAGTCATTCATTGTTATAC 658
|||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 624 TGAGAACATTAGGCATCTTGTTGATTGCTTATGTATTTTTCAAGTCATTCATTGTTATAC 683
Query 659 AACGTTGCAGGCAAGAGAGGGATACTAGACTCTCTGGTTTCTCGTCTGATGAAGAAACTG 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 684 AACGTTGCAGGCAAGAGAGGGATACTAGACTCTCTGGTTTCTCGTCTGACGAAGAAACTG 743
Query 719 CACCGCCTCGGATATCGATGGCATTGCCGGAGAGACCCGAACTTCATGTTCCCGTAAACT 778
||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 744 CACCGCCTCGGATATTGATGGCATTGCCGGAAAGACCCGAGCTTCATGTTCCTGTAAATT 803
Query 779 AA 780
||
Sbjct 804 AA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5