BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330664

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47710.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB...   837    0.0  


> AT5G47710.1 | Symbols:  | Calcium-dependent lipid-binding (CaLB 
domain) family protein | chr5:19329675-19331329 FORWARD LENGTH=828
Length=828

 Score =  837 bits (453),  Expect = 0.0
 Identities = 485/501 (97%), Gaps = 0/501 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGGAGCCACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATC  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  ATGGGCGAGCCACTAGGACTGCTCCAGGTGACTGTTATTCAAGGAAAGAAACTGGTGATC  236

Query  61   CGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGTCAGCCAAG  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  237  CGAGATTTCAAGTCAAGTGATCCTTATGTGATTGTCAAATTAGGAAATGAGTCAGCGAAG  296

Query  121  ACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGGATGAGGAACTCAGCTTTACACTG  180
            |||||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||
Sbjct  297  ACCAAAGTGATCAACAATTGCCTGAATCCAGTGTGGAATGAGGAACTGAACTTTACTCTG  356

Query  181  AAAGATCCTACAGCAGTTCTCGCATTGGAAGTGTTTGATAAAGATAGGTTCAAGGCGGAT  240
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  357  AAAGATCCTGCAGCAGTTCTCGCATTGGAAGTGTTTGATAAAGATAGGTTCAAGGCAGAT  416

Query  241  GACAAGATGGGTCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCTAGACTAAGA  300
            ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  417  GACAAGATGGGCCATGCCTCTCTCAGCCTTCAACCGCTTATCTCAGTTGCCAGACTAAGA  476

Query  301  CATGTAGTCCGCGTTTCCTCTGGCGAGACAACGCTTAGGAAAGTGTTACCGGATCCAGAG  360
            || ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  477  CACGTAGTCCGCGTGTCCTCTGGTGAGACAACGCTTAGGAAAGTATTACCGGATCCAGAG  536

Query  361  AACTGCGTATCTCGGGAGAGCACAATCAGTTGCATAGACGGAGAGGTGGTGCAGAGCGTG  420
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  537  AACTGCGTATCTCGAGAGAGCACAATCAGTTGCATAGACGGAGAGGTGGTGCAGAGTGTG  596

Query  421  TGGCTGAGGCTGTGTGCTGTTGAATCGGGTGAGATTGAGTTGAAGATAAAGTTGATTGAT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  597  TGGCTGAGGCTGTGTGCTGTTGAATCGGGTGAGATTGAGTTGAAGATAAAGTTGATTGAT  656

Query  481  CCTCCTGGAACAAACAAGTAG  501
            |||||||||||||||||||||
Sbjct  657  CCTCCTGGAACAAACAAGTAG  677



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5