BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330665
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47700.1 | Symbols: | 60S acidic ribosomal protein family |... 532 6e-151
AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family |... 484 2e-136
AT4G00810.1 | Symbols: | 60S acidic ribosomal protein family |... 331 2e-90
> AT5G47700.1 | Symbols: | 60S acidic ribosomal protein family
| chr5:19327803-19328983 REVERSE LENGTH=675
Length=675
Score = 532 bits (288), Expect = 6e-151
Identities = 325/342 (95%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 118 ATGTCGACAGTGGGAGAGCTCGCTTGCAGCTACGCTGTTATGATCCTCGAGGATGAGGGT 177
Query 61 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACTATTGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACCATTGAG 237
Query 121 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTAATC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTCATC 297
Query 181 ATGAACGTtggtgctggtggtggaggtggtgctcccgttgctgctgctgct---gctgc- 236
|||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||
Sbjct 298 ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCGCCTGTTGCAGCTGCTGCTCCTGCTGCT 357
Query 237 --cggtggtgctgcctcagctgctcctgctgcAGAGGAGAAGAAGAAGGACGAACCAGCA 294
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 GGCGGTGGTGCTGCCGCTGCTGCTCCTGCTGCCGAGGAGAAGAAGAAGGACGAACCAGCA 417
Query 295 GAAGAGAGTGATGGAGATTTGGGTTTCGGCTTGTTCGATTAA 336
|||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 GAAGAGAGTGATGGAGATTTGGGTTTTGGCTTGTTCGATTAA 459
> AT1G01100.1 | Symbols: | 60S acidic ribosomal protein family
| chr1:50090-51108 REVERSE LENGTH=587
Length=587
Score = 484 bits (262), Expect = 2e-136
Identities = 314/339 (93%), Gaps = 3/339 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ATGTCGACAGTTGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 114
Query 61 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTTACTATTGAG 120
|| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 115 ATCGCTATCACGGCTGACAAAATCGCGACCTTGGTGAAAGCTGCTGGTGTTAGTATTGAG 174
Query 121 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAATGTCACTGATCTAATC 180
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 175 TCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAAACGTAACGTGACTGATCTCATC 234
Query 181 ATGAACGTtggtgctggtggtggaggtggtgctcccgttgctgctgctgct---gctgcc 237
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 235 ATGAACGTTGGTGCTGGTGGTGGAGGTGGTGCTCCGGTTGCAGCTGCTGCTCCAGCTGCT 294
Query 238 ggtggtgctgcctcagctgctcctgctgcAGAGGAGAAGAAGAAGGACGAACCAGCAGAA 297
|| |||| ||| |||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 295 GGCGGTGGTGCGGCAGCTGCTCCTGCTGCTGAGGAGAAGAAGAAGGATGAGCCAGCAGAA 354
Query 298 GAGAGTGATGGAGATTTGGGTTTCGGCTTGTTCGATTAA 336
|||||||| ||||||||||||||||| ||||| || |||
Sbjct 355 GAGAGTGACGGAGATTTGGGTTTCGGTTTGTTTGACTAA 393
> AT4G00810.1 | Symbols: | 60S acidic ribosomal protein family
| chr4:345952-347184 REVERSE LENGTH=676
Length=676
Score = 331 bits (179), Expect = 2e-90
Identities = 296/349 (85%), Gaps = 22/349 (6%)
Strand=Plus/Plus
Query 1 ATGTCGACAGTGGGAGAGCTTGCTTGCAGCTACGCTGTTATGATCCTCGAGGACGAGGGT 60
||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 108 ATGTCGACAGTCGGAGAACTTGCTTGCAGCTACGCTGTTATGATCCTTGAAGACGAGGGC 167
Query 61 ATTGCTATCACGGCTGACAAAATCGCCACTTTGGTGAAAGCTGCTGGTGTT-ACTATTGA 119
||||| ||||| |||| || || || |||||||| ||||| ||||||||| | |||||
Sbjct 168 ATTGCCATCACTTCTGATAAGATTGCGACTTTGGTCAAAGCGGCTGGTGTTGAG-ATTGA 226
Query 120 GTCATACTGGCCAATGCTATTCGCCAAGATGGCTGAGAA-ACGTAATGTCACTGATCTAA 178
||| |||||||||||| |||||||||||||||||||||| | | |||||||| || || |
Sbjct 227 GTCTTACTGGCCAATGTTATTCGCCAAGATGGCTGAGAAGA-GAAATGTCACAGACCTTA 285
Query 179 TCATGAACGTtggtgctggtggtgg---aggtggtgctccc-gt-t--gctgctgc---t 228
||||||| ||||||||||||||||| ||| ||||| ||| || | ||||| || |
Sbjct 286 TCATGAATGTTGGTGCTGGTGGTGGTGGAGGCGGTGC-CCCAGTGTCTGCTGCCGCACCT 344
Query 229 gctgctgccggtggtgctgcct-cagctgctcctgctgcAGAGGAGAAGAAGAAGGACGA 287
|||||||| || || ||||| | | ||||| |||||| | ||||| |||||||||||||
Sbjct 345 GCTGCTGCTGGAGGAGCTGC-TGCTGCTGCCCCTGCT--A-AGGAGGAGAAGAAGGACGA 400
Query 288 ACCAGCAGAAGAGAGTGATGGAGAT-TTGGGTTTCGGCTTGTTCGATTA 335
||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 401 ACCCGCAGAAGAGAGTGATGGAGATCTTGG-TTTCGGCTTGTTCGATTA 448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15683537688
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5