BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330667
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47680.1 | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_f... 1589 0.0
> AT5G47680.1 | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009),
tRNA (guanine-N(1)-)-methyltransferase, metazoa
(InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase,
eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:19316132-19317522
REVERSE LENGTH=1287
Length=1287
Score = 1589 bits (860), Expect = 0.0
Identities = 989/1047 (94%), Gaps = 26/1047 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGCGGCGACGGGAAATGACGACGACAACGGCTGCTTCGATAACCAGCCAAAACCA 60
||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 56 ATGGCGGCGGCGACGGGAAAT---GACGACAACGGCTGCTTCGAT---------AAACCA 103
Query 61 GAATCTGAACCGGCTCCGGTAAACCTTTCGCCTCCTCTGTCgaagaatgctcagaagaag 120
|||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 104 GAATCTGAACCGGCACCGGTTAACGTTTCGCCTCCCCTGTCGAAGAATGCTCAGAAGAAG 163
Query 121 cagctgaagcagcaaagatacgaagcgaagaaagctgagaagaaggcacaggagaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CAGCTGAAGCAGCAAAGATACGAAGCGAAGAAAGCTGAGAAGAAGGCACAGGAGAAGGAG 223
Query 181 cagaagaggaaagaaggagagagaaagcttaaggaatgggaagaaACCCTAGCGAACGCG 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CATAAGAGAAAAGAAGGAGAGAGAAAGCTTAAGGAATGGGAAGAAACCCTAGCGAACGCG 283
Query 241 ACGGAGGAAGAGAGGCTGCAGCTGATTgagtcgaggaagagtcttcggaaagagagaatg 300
|||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||
Sbjct 284 ACGGAGGAAGAGAGGCTGAAGCTTATTGAGTCGAGGAAGAGTCTGCGGAAGGAGAGAATG 343
Query 301 gagaagagatcggaggagaaggagaagaagatggagagGCTTAATCGAGCTAAAGAAATA 360
|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 344 GAGAAGAGATCGGAGGAGAAGGAGAAGAAGATAGAGAGGCTGAATCAAGCTAAAGAAATA 403
Query 361 GGTCAAAAGATCGTAGTAGATGTTGATTTTGCTCATCTTATGTCTGAGTCTGAGATCTCA 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 404 GGTCAAAAGATCGTAGTAGATGTTGATTTTGCTCATCTCATGTCTGAGTCTGAGATCTCA 463
Query 421 AGCCTCGTTCAGCAGATTATGTATTGCTATGCTGTGAATGGGAGAAGCACTTCACCTTGT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 464 AGCCTCGTTCAGCAGATTATGTATTGCTATGCGGTGAATGGGAGAAGCACTTCACCTTGT 523
Query 481 CATCTATGGCTTACAGGAGTCCAAGGGAAGATGAGTACTGAGCTTGACAAGCTTCCTGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CATCTATGGCTTACAGGAGTCCAAGGGAAGATGAGTACTGAGCTTGACAAGCTTCCTGGT 583
Query 541 TTTGAGAAATGGTTCATTGAGAAGGAAAGTAAGTGTTACACTGAAGCCATGGCTGATCAG 600
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 584 TTTGAGAAATGGTTCATTGAAAAGGAAAGTAGGTGTTACATTGAAGCCATGGCTGATCAG 643
Query 601 AAAGATAATTTGGTCTATCTTACGGCTGATTCTGAAACTGTTTTGGATGATCTTGA-CCT 659
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 644 AAAGATAATTTGGTGTATCTTACGGCTGATTCTGAAACTGTTTTGGATGATCTTGACCCT 703
Query 660 CAAGCATATCTACATTATTGGTGGCTTAGTGGATCGAAACCGGTTCAAAGGGATCACCAT 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 704 -AAGCATATCTACATTATCGGTGGCTTAGTGGATCGAAACCGGTTCAAAGGGATCACCAT 762
Query 720 GACCAAGGCTCAAGAACAAGGCATTAAAACAGCTAAGCTTCCCATAGGAGAGTATATGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GACCAAGGCTCAAGAACAAGGCATTAAAACAGCTAAGCTTCCCATAGGAGAGTATATGAA 822
Query 780 AATGTCAAGTTCTCAGGTTCTCACTGTGAACCAAGTTTTGGAGATACTCGTCAAGTTTCT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AATGTCAAGTTCTCAGGTTCTCACTGTGAACCAAGTTTTGGAGATACTCGTCAAGTTTCT 882
Query 840 GGAGACTAGGGACTGGAAAACAGCCTTCTTCACTGTCATTCCTCAGAGGAAAAGAACCGG 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 883 GGAGACTAGGGACTGGAAAACAGCCTTCTTCACTGTGATTCCTCAGAGGAAAAGAACCGG 942
Query 900 ACTTGATCCTGTTGATTGTTCGAAATTGGAACCTCTTTCTGAAGAGCATCTGGAGGAAGA 959
|||||||||||||||||||||||||||||||| | | ||||||||||||| |||| ||||
Sbjct 943 ACTTGATCCTGTTGATTGTTCGAAATTGGAACATATATCTGAAGAGCATCAGGAGAAAGA 1002
Query 960 GGCTGAGGCGGACGAGAGTG-A--------T---CTTCTGGAGAGGAAAAAGGTATGCAT 1007
||||||| ||||||||| | | |||||||||||||||||||||||| |
Sbjct 1003 TACTGAGGCAAACGAGAGTGCAGACAAACATGATCTTCTGGAGAGGAAAAAGGTATGCGT 1062
Query 1008 TGAAGTTCCTCTGGAAAGTAGTAGCTA 1034
|||||||||| ||||||||||||||||
Sbjct 1063 TGAAGTTCCTTTGGAAAGTAGTAGCTA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5