BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330672

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47635.1 | Symbols:  | Pollen Ole e 1 allergen and extensin ...   701    0.0  


> AT5G47635.1 | Symbols:  | Pollen Ole e 1 allergen and extensin 
family protein | chr5:19307048-19307895 REVERSE LENGTH=774
Length=774

 Score =  701 bits (379),  Expect = 0.0
 Identities = 457/495 (92%), Gaps = 3/495 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGCTTCTTCATCCTCCTTTGCTTCTTGTTATTCTCCTTCTTTTTCTTCAACGGG  60
            |||||||||||||||||| ||| ||||||||||||| |||| ||||| || |||| ||| 
Sbjct  47   ATGGGAAGCTTCTTCATCATCCGTTGCTTCTTGTTACTCTCTTTCTTCTTGTTCACCGGA  106

Query  61   GCATTTGGGAAT-A--TATGGACCAGAACGGAAATGGTGGAGATGGCTGGCTACGGTGAA  117
            |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  107  GCATTTGGGAATAATTTATGGACCAGAACGGAAATGGTGGAGATGGCTGGCTACGGTGAA  166

Query  118  CAGAAACTATCCTCCGTCATGATCACCGGATCTCTTCTCTGCGACACTTCACGTCCTTAC  177
            |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  167  CAGAAACTCTCCTCTGTCGTGATCACCGGATCTCTTCTCTGCGACACTTCACGTCCTCAC  226

Query  178  CTTCACTCTGTCCCTATTCCAGGTGCCACTGTTGCAATCAAATGCCAAACTGGATCCAAA  237
            ||||||||  ||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct  227  CTTCACTCCATCCCTATCCCAGGTGCCACCGTTGCCATCAAGTGCCACACTGGATCCAAA  286

Query  238  AGGAGGTCCAAATGGATTAAGGCTGTTACTGATGAATTGGGAGAGTTTGAAATCGATCTC  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  287  AGGAGGTCCAAATGGATTAAGGCTGTTACTGATGAATTGGGAGAGTTTGAAATCGATCTT  346

Query  298  CCCTCCCAACTCCACGCGATTCCAGACCTCGAAAACAAATGTTTCATCAAGCCAGTATAT  357
            |||||||||||||| ||||||||| |||| |||||||  |||||||||||||||||||||
Sbjct  347  CCCTCCCAACTCCATGCGATTCCACACCTTGAAAACACTTGTTTCATCAAGCCAGTATAT  406

Query  358  GTGCCTAGGCCCTATAGATGCTATCACACCTCTACCAATATACACAAACGTATTAAACTA  417
            |||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| 
Sbjct  407  GTGCCTAGGCCCTATAGATGCTATAACACCTCTACCAATATACACAAACCTATCAAACTT  466

Query  418  GTTTCCTCTACCAATGGCCTCCGAGTCTACACCTCAGGGAAGATCAGGTTACAGGGCCAC  477
            |||||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||
Sbjct  467  GTTTCCTCTACCAATGGTTTCCGTGTCTACACCTCAGGGAAAATCAGGTTACAGGGCCAC  526

Query  478  ACTTCAAGATCATAG  492
            | ||| |||||||||
Sbjct  527  AGTTCGAGATCATAG  541



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5