BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg330675

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47600.1 | Symbols:  | HSP20-like chaperones superfamily pro...   521    1e-147


> AT5G47600.1 | Symbols:  | HSP20-like chaperones superfamily protein 
| chr5:19299782-19300499 REVERSE LENGTH=602
Length=602

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 330/354 (93%), Gaps = 0/354 (0%)
 Strand=Plus/Plus

Query  37   ATTCCGTCTCCAATGAGGAACCTATTTCAGAAAAGTGGGAGTCAAGCAGTGTACGAGATG  96
            |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct  86   ATTCCGTCTCCAATAAGGAACCGATTTCAGAAAAGTGGGAGTCAAGCGGTGTACGAGGTG  145

Query  97   TCAGAGACAAAGAAATCTTGCGTGATGAGAGTCGACATGCCTGGTTGTCCCGAGTCAGAT  156
             ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  146  ACAGAGACGAAGAAATCTTGCGTGACGAGAGTCGACATGCCTGGTTGTCCCGAGTCAGAT  205

Query  157  CTCACCTACTGGGTCGACGACAACAACGTCCACTTCTTCGCCGACGAACCAGCCATGCCC  216
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| 
Sbjct  206  CTCACCTACTGGGTCGACGCCAACAACGTCCACTTCTTCGCCGACGAACCAGCAATGCCT  265

Query  217  GAGTACGAAAACACCGGTCGCAAATACGGAGGCTCCATGGTTTTCAACCCTGAGTCTTAC  276
            |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct  266  GAGTACGAAAACGCCGGACGCAAATACGGAGGCTCCATGATTTTCAACCCTGAGGCTTAC  325

Query  277  AACGTCAAGAAAGTTAAGGTGAAGCTTATCAACGGAGTGCTCTGGATCACCGTCCCTAAG  336
             |||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  326  GACGTCAAGAAAACTAAAGTGAAGCTTATCAACGGAGTGCTCTGGATCACCGTCCCTAAG  385

Query  337  ATCCCAGGCAAAAACGCCTCCATTGATGTCATCGAGAGGATCATCCGTTACTGA  390
            ||||||||||||||||| |||||| ||||||  ||||||||| ||| |||||||
Sbjct  386  ATCCCAGGCAAAAACGCTTCCATTAATGTCAAGGAGAGGATCCTCCATTACTGA  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5