BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330713
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47150.1 | Symbols: | YDG/SRA domain-containing protein | c... 1275 0.0
> AT5G47150.1 | Symbols: | YDG/SRA domain-containing protein |
chr5:19150045-19151793 FORWARD LENGTH=1088
Length=1088
Score = 1275 bits (690), Expect = 0.0
Identities = 900/999 (90%), Gaps = 23/999 (2%)
Strand=Plus/Plus
Query 14 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTCCCACCGGGTTGTGGAACTCATATTG 73
|||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || |
Sbjct 109 AGAAGCGATCTTTAGTCTTCGCCATTCGAGACTTTCCACCAGGCTGTGGAACTCACATCG 168
Query 74 ATGTTTCGCCGAGGTTT-AATCTTCCAGCTGACAAGTCCTTCAAGAATCAAAGAACTGGT 132
|||||||| ||| |||| |||| ||||||||| ||| |||||||| ||| ||||||||||
Sbjct 169 ATGTTTCGTCGA-GTTTGAATCATCCAGCTGAGAAGGCCTTCAAGCATCCAAGAACTGGT 227
Query 133 GATGTTTCTGGCGAGAAGAATCTGAGTTTTGCAGCTCCTAAACCGGAAGGAACTTGTCTC 192
||||| |||||| | |||||||||||||||| | ||||||| |||||||||||||||
Sbjct 228 GATGTCTCTGGC--G-AGAATCTGAGTTTTGCTGAGGCTAAACCTGAAGGAACTTGTCTC 284
Query 193 AAACGAGAATCAGCTGATCATGAGGACCATATCGATCATATTGTTGCAGCTCCTGAACCT 252
|||||||||||||||||||| | | ||| || || | ||||||||||||||| |
Sbjct 285 AAACGAGAATCAGCTGATCA--A-G-----ATC-AT-AT-CT-TTGCAGCTCCTGAACAT 332
Query 253 AACGCCAAGCGAGAACTAGCTGATCAGGATCATGTTGTTGCAGCTACTACAGTACCTTAT 312
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 333 AATGCCAAGCGAGAACCAGCTGGTCAGGATCATGTTGTTGCAGCTACTACAGTAGCTTAT 392
Query 313 GCAACTTCATCTCACAGACAAGAACTAGAGATCAGAAACTCTGATTGTGATCCTACTCCT 372
||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||
Sbjct 393 GCAACTTCATCTCACAGACAAAAAGTGGAGATCGGAAACTCTGATTGTGATCCTACTCCT 452
Query 373 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTATACAGCCAGTTGGATCGA 432
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 453 CGTGAGAAAGTGCTCGAGGTATTGAGTCTTTTCAAACAAGTTTACAACCAGTTGGATCGA 512
Query 433 GATAAAAAAGCAAGACGCTG-TGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 491
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 513 GATAAAAAAGCAAGACG-TGGTGGAGATTTTTTGGATGCAACAAGCAGAATCGACCTCAA 571
Query 492 AACACTAACTGTCTTAGAGAATATGGGTAAACAAGTGAACACAGAGAAGAGAATCGGATC 551
|||||||||||| || ||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 572 AACACTAACTGTGTTGGAGAAGATGGGAAAACAAGTGAACACGGAGAAGAGAATCGGATC 631
Query 552 AGTTCCCGGAGTAGAAGTTGGG-GATGTGTTTCAGTACAAAACTGAACTCCGTCTCGTCG 610
||||| ||| | || | || |||||||||||||||||||| ||||| || ||||||
Sbjct 632 GGTTCCTGGAATC-AACATCGGAGATGTGTTTCAGTACAAAACCGAACTTCGGGTCGTCG 690
Query 611 GGCTCCATTCCAAGACGATGTGCGGTATCGATTACCTGAAAATCGGAGATGATAGACTCG 670
|||| || |||||| |||||||||||||||| ||| | ||| |||||||||||||| ||
Sbjct 691 GGCTTCACTCCAAGCCGATGTGCGGTATCGACTACATTAAACTCGGAGATGATAGAATCA 750
Query 671 CGACAAGCATAGTAGCATCAGAAGGGTATGGATACAATGATACATTCAAGTCTGGTGTGA 730
|||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 751 CGACAAGCATCGTGGCATCAGAAGGGTATGGATACAATGATACATACAACTCTGGTGTGA 810
Query 731 TGATTTATACAGGTGAAGGAGGTAACGTGATCAGCAAGGATAAGAAGACTGAAGATCAGA 790
|| ||||||| |||||||||||||||||||||| |||| | ||||| |||||||||||||
Sbjct 811 TGGTTTATACGGGTGAAGGAGGTAACGTGATCAACAAGCAAAAGAAAACTGAAGATCAGA 870
Query 791 AATTGGTCAAAGGGAATTTAGCATTGGCTACTAGTATGAGGCAGAAGAAG-CAAGTGAGA 849
||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 871 AATTGGTAAAAGGGAATTTGGCATTGGCTACTAGTATGAGGCAGAAGA-GTCAAGTGAGA 929
Query 850 GTGATTCGTGGAGAAGAGAGATGGGATCATAAAGGGAAACGATATGTGTACGATGGTTTG 909
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 930 GTGATTCGTGGAGAAGAGAGATTGGATCGTAAAGGGAAACGATATGTCTACGATGGTTTG 989
Query 910 TATATGGTTGAAGAATATTGGCCTGAGAGAGAGGTTAGAGGAAAAACTGTGTATAAGTTC 969
||||||||||||||||||||| ||||||||| |||||||| || | |||||||||||||
Sbjct 990 TATATGGTTGAAGAATATTGGGTTGAGAGAGATGTTAGAGGTAAGAGTGTGTATAAGTTC 1049
Query 970 AAGCTTTGTAGAATTCCTGGTCAACCTCCATTGACTTGA 1008
||||||||||||||||||||||||| |||||||||||||
Sbjct 1050 AAGCTTTGTAGAATTCCTGGTCAACTTCCATTGACTTGA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5